RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 PLAC8Q9NZF1 115 aa10.68□□□□□ -0.7
HMGN4-201ENST00000377575 IGLV4-69A0A075B6H9 119 aa10.67□□□□□ -0.7
HMGN4-201ENST00000377575 TRAV9-1A0A075B6T8 112 aa10.67□□□□□ -0.7
HMGN4-201ENST00000377575 C5orf38Q86SI9 138 aa10.67□□□□□ -0.7
HMGN4-201ENST00000377575 COMMD7Q86VX2 200 aa10.67□□□□□ -0.7
HMGN4-201ENST00000377575 Q8N8P6 123 aa10.67□□□□□ -0.7
HMGN4-201ENST00000377575 PYGO1Q9Y3Y4 419 aa10.67□□□□□ -0.7
HMGN4-201ENST00000377575 A0A096LNI7 61 aa10.66□□□□□ -0.7
HMGN4-201ENST00000377575 KRTAP29-1A8MX34 341 aaPredicted RBP10.66□□□□□ -0.7
HMGN4-201ENST00000377575 C7orf33Q8WU49 177 aa10.66□□□□□ -0.7
HMGN4-201ENST00000377575 FAM104AQ969W3 186 aa10.66□□□□□ -0.7
HMGN4-201ENST00000377575 OPRPNQ99935 248 aaPredicted RBP10.66□□□□□ -0.7
HMGN4-201ENST00000377575 HERC1Q15751 4861 aa10.66□□□□□ -0.7
HMGN4-201ENST00000377575 K7EMI3 77 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 S100PP25815 95 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 SPAG11BQ08648 103 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 ORMDL2Q53FV1 153 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 STPG4Q8N801 248 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 OR10D4PQ8NGN7 298 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 TMEM141Q96I45 108 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 C2orf48Q96LS8 159 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 CAMK2N2Q96S95 79 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 CYSLTR1Q9Y271 337 aa10.65□□□□□ -0.7
HMGN4-201ENST00000377575 IGLV4-3A0A075B6K6 122 aa10.64□□□□□ -0.71
HMGN4-201ENST00000377575 NXT2Q9NPJ8 142 aaKnown RBP10.64□□□□□ -0.71
HMGN4-201ENST00000377575 PKHD1L1Q86WI1 4243 aa10.63□□□□□ -0.71
HMGN4-201ENST00000377575 TGIF2-C20orf24A0A0A6YYL0 155 aa10.63□□□□□ -0.71
HMGN4-201ENST00000377575 IGHV3OR16-9A0A0B4J2B5 98 aa10.63□□□□□ -0.71
HMGN4-201ENST00000377575 LOC107984640A0A0U1RRK4 108 aa10.63□□□□□ -0.71
HMGN4-201ENST00000377575 Q6ZRU5 148 aa10.63□□□□□ -0.71
HMGN4-201ENST00000377575 C2orf66Q6UXQ4 117 aa10.62□□□□□ -0.71
HMGN4-201ENST00000377575 Q6ZN92 141 aa10.62□□□□□ -0.71
HMGN4-201ENST00000377575 TEX43Q6ZNM6 134 aa10.62□□□□□ -0.71
HMGN4-201ENST00000377575 ORAOV1Q8WV07 137 aa10.62□□□□□ -0.71
HMGN4-201ENST00000377575 C2orf88Q9BSF0 95 aa10.62□□□□□ -0.71
HMGN4-201ENST00000377575 OXTP01178 125 aa10.61□□□□□ -0.71
HMGN4-201ENST00000377575 NPSP0C0P6 89 aa10.61□□□□□ -0.71
HMGN4-201ENST00000377575 G0S2P27469 103 aa10.61□□□□□ -0.71
HMGN4-201ENST00000377575 F8WDY8 70 aa10.6□□□□□ -0.71
HMGN4-201ENST00000377575 PTTG1IPP53801 180 aa10.6□□□□□ -0.71
HMGN4-201ENST00000377575 LORP23490 312 aaPredicted RBP10.59□□□□□ -0.71
HMGN4-201ENST00000377575 HNRNPA3P51991 378 aaKnown RBP10.59□□□□□ -0.71
HMGN4-201ENST00000377575 GAGE2BQ13066 116 aa10.59□□□□□ -0.71
HMGN4-201ENST00000377575 RHEBQ15382 184 aa10.59□□□□□ -0.71
HMGN4-201ENST00000377575 KIAA1644Q3SXP7 199 aa10.59□□□□□ -0.71
HMGN4-201ENST00000377575 COX19Q49B96 90 aa10.59□□□□□ -0.71
HMGN4-201ENST00000377575 GNB1LQ9BYB4 327 aa10.59□□□□□ -0.71
HMGN4-201ENST00000377575 NDUFA1O15239 70 aa10.58□□□□□ -0.72
HMGN4-201ENST00000377575 RNF151Q2KHN1 245 aa10.58□□□□□ -0.72
HMGN4-201ENST00000377575 C10orf91Q5T1B1 145 aa10.58□□□□□ -0.72
HMGN4-201ENST00000377575 LINC00242Q5T6M2 205 aa10.58□□□□□ -0.72
HMGN4-201ENST00000377575 CARHSP1Q9Y2V2 147 aaKnown RBP10.58□□□□□ -0.72
HMGN4-201ENST00000377575 A0A087WZ39 114 aa10.57□□□□□ -0.72
HMGN4-201ENST00000377575 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.57□□□□□ -0.72
HMGN4-201ENST00000377575 UBE2D1P51668 147 aa10.57□□□□□ -0.72
HMGN4-201ENST00000377575 RPL18AQ02543 176 aaKnown RBP10.57□□□□□ -0.72
HMGN4-201ENST00000377575 PAPPA-AS1Q5QFB9 102 aa10.57□□□□□ -0.72
HMGN4-201ENST00000377575 VCX2Q9H322 139 aa10.57□□□□□ -0.72
HMGN4-201ENST00000377575 MRPL35Q9NZE8 188 aaKnown RBP10.57□□□□□ -0.72
HMGN4-201ENST00000377575 LRP1Q07954 4544 aaKnown RBP10.57□□□□□ -0.72
HMGN4-201ENST00000377575 MT-ND6P03923 174 aa10.56□□□□□ -0.72
HMGN4-201ENST00000377575 AMELXQ99217 191 aa10.56□□□□□ -0.72
HMGN4-201ENST00000377575 RPS10P5Q9NQ39 176 aa10.56□□□□□ -0.72
HMGN4-201ENST00000377575 FAT3Q8TDW7 4589 aa10.55□□□□□ -0.72
HMGN4-201ENST00000377575 IGIPA6NJ69 53 aa10.55□□□□□ -0.72
HMGN4-201ENST00000377575 PRR3P79522 188 aaKnown RBP10.55□□□□□ -0.72
HMGN4-201ENST00000377575 LINC00173Q6ZV60 143 aa10.55□□□□□ -0.72
HMGN4-201ENST00000377575 TIMM17AQ99595 171 aa10.55□□□□□ -0.72
HMGN4-201ENST00000377575 LINC01561Q8N1V8 128 aa10.54□□□□□ -0.72
HMGN4-201ENST00000377575 TOMM6Q96B49 74 aa10.54□□□□□ -0.72
HMGN4-201ENST00000377575 A0A0J9YXV3 536 aa10.53□□□□□ -0.72
HMGN4-201ENST00000377575 ZC2HC1BQ5TFG8 222 aa10.53□□□□□ -0.72
HMGN4-201ENST00000377575 LINC01549A6NIU2 74 aa10.52□□□□□ -0.73
HMGN4-201ENST00000377575 SEC11AP67812 179 aa10.52□□□□□ -0.73
HMGN4-201ENST00000377575 FAM19A3Q7Z5A8 133 aa10.52□□□□□ -0.73
HMGN4-201ENST00000377575 ALKBH7Q9BT30 221 aaPredicted RBP10.52□□□□□ -0.73
HMGN4-201ENST00000377575 MRPL18Q9H0U6 180 aaKnown RBP10.52□□□□□ -0.73
HMGN4-201ENST00000377575 HERVK_113P63121 156 aa10.51□□□□□ -0.73
HMGN4-201ENST00000377575 FABP9Q0Z7S8 132 aa10.51□□□□□ -0.73
HMGN4-201ENST00000377575 TLX1NBP0CAT3 122 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 KIAA0087Q14695 138 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 NDUFA5Q16718 116 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 C10orf25Q5T742 122 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 UNQ6190/PRO20217Q6UXQ8 127 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 ERASQ7Z444 233 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 SCGB3A1Q96QR1 104 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 SMCO4Q9NRQ5 59 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 C6orf48Q9UBA6 75 aa10.5□□□□□ -0.73
HMGN4-201ENST00000377575 TRBV30A0A0K0K1B3 111 aa10.49□□□□□ -0.73
HMGN4-201ENST00000377575 LINC01546A6NGU7 62 aa10.49□□□□□ -0.73
HMGN4-201ENST00000377575 PRSS2P07478 247 aa10.49□□□□□ -0.73
HMGN4-201ENST00000377575 C9orf116Q5BN46 136 aaPredicted RBP10.49□□□□□ -0.73
HMGN4-201ENST00000377575 Q6ZRP5 223 aa10.49□□□□□ -0.73
HMGN4-201ENST00000377575 FA2HQ7L5A8 372 aa10.49□□□□□ -0.73
HMGN4-201ENST00000377575 GEMIN7Q9H840 131 aaKnown RBP10.49□□□□□ -0.73
HMGN4-201ENST00000377575 A0A1W2PNN7 141 aa10.48□□□□□ -0.73
HMGN4-201ENST00000377575 SVBPQ8N300 66 aa10.48□□□□□ -0.73
HMGN4-201ENST00000377575 PACRGQ96M98 296 aaPredicted RBP10.48□□□□□ -0.73
HMGN4-201ENST00000377575 SNAPINO95295 136 aa10.47□□□□□ -0.73
HMGN4-201ENST00000377575 APOC3P02656 99 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms