RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 HRCT1Q6UXD1 115 aa4.81□□□□□ -1.64
VPS39-202ENST00000348544 OVOL2Q9BRP0 275 aa4.81□□□□□ -1.64
VPS39-202ENST00000348544 HIVEP3Q5T1R4 2406 aa4.81□□□□□ -1.64
VPS39-202ENST00000348544 CCL18P55774 89 aa4.8□□□□□ -1.64
VPS39-202ENST00000348544 WFDC9Q8NEX5 89 aa4.8□□□□□ -1.64
VPS39-202ENST00000348544 CSPG4Q6UVK1 2322 aa4.8□□□□□ -1.64
VPS39-202ENST00000348544 COX7B2Q8TF08 81 aa4.79□□□□□ -1.64
VPS39-202ENST00000348544 H0YGX0 51 aa4.79□□□□□ -1.64
VPS39-202ENST00000348544 IGHV4-59P01825 116 aa4.79□□□□□ -1.64
VPS39-202ENST00000348544 RPL36AP83881 106 aaKnown RBP4.79□□□□□ -1.64
VPS39-202ENST00000348544 RPL36ALQ969Q0 106 aaKnown RBP4.79□□□□□ -1.64
VPS39-202ENST00000348544 C2CD3Q4AC94 2353 aa4.79□□□□□ -1.64
VPS39-202ENST00000348544 IGF2RP11717 2491 aa4.79□□□□□ -1.64
VPS39-202ENST00000348544 C10orf105Q8TEF2 133 aa4.79□□□□□ -1.64
VPS39-202ENST00000348544 TOMM7Q9P0U1 55 aa4.79□□□□□ -1.64
VPS39-202ENST00000348544 CSMD2Q7Z408 3487 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 GHRHP01286 108 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 CCKP06307 115 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 LINC00158P58513 81 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 DEFB136Q30KP8 78 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 C18orf65Q6ZTR6 163 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 FAM19A1Q7Z5A9 133 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 CELSR2Q9HCU4 2923 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 TRAV23DV6A0A075B6W5 121 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 C19orf84I3L1E1 186 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 SLURP1P55000 103 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 MAP6D1Q9H9H5 199 aa4.78□□□□□ -1.64
VPS39-202ENST00000348544 TRGV1A0A0A0MS02 117 aa4.77□□□□□ -1.65
VPS39-202ENST00000348544 K7EQD1 137 aa4.77□□□□□ -1.65
VPS39-202ENST00000348544 IL17DQ8TAD2 202 aa4.77□□□□□ -1.65
VPS39-202ENST00000348544 INSP01308 110 aa4.77□□□□□ -1.65
VPS39-202ENST00000348544 IGHV4-30-2A0A087WSY4 118 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 LY6G6DO95868 133 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 MSMBP08118 114 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 PFN2P35080 140 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 DEFB112Q30KQ8 113 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 Q6ZTI0 123 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 ORMDL1Q9P0S3 153 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 XCL2Q9UBD3 114 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 IGKV3OR2-268A0A0C4DH90 116 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 PAX4O43316 350 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 ENHOQ6UWT2 76 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 LINC00167Q96N53 147 aa4.76□□□□□ -1.65
VPS39-202ENST00000348544 A0A096LNT2 108 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 TRBV10-1A0A0K0K1A3 114 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 TRBV6-4A0A1B0GX49 114 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 IBA57-AS1B1ANH7 110 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 NDUFC2-KCTD14E9PQ53 114 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 NDUFC2O95298 119 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 LYPD5Q6UWN5 251 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 C1orf158Q8N1D5 194 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 C20orf197Q8N268 126 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 TMEM243Q9BU79 118 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 IGLV4-60A0A075B6I1 120 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 IGHV3OR16-9A0A0B4J2B5 98 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 LOC100131303A0A0U1RQF7 123 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 EPM2AB3EWF7 344 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 NANOS2P60321 138 aaKnown RBP4.75□□□□□ -1.65
VPS39-202ENST00000348544 UBE2E2Q96LR5 201 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 SPG11Q96JI7 2443 aa4.75□□□□□ -1.65
VPS39-202ENST00000348544 UBE2L6O14933 153 aa4.74□□□□□ -1.65
VPS39-202ENST00000348544 CUBNO60494 3623 aa4.74□□□□□ -1.65
VPS39-202ENST00000348544 XCL1P47992 114 aa4.74□□□□□ -1.65
VPS39-202ENST00000348544 ATP5EP2Q5VTU8 51 aa4.74□□□□□ -1.65
VPS39-202ENST00000348544 MUC6Q6W4X9 2439 aa4.74□□□□□ -1.65
VPS39-202ENST00000348544 NOTCH3Q9UM47 2321 aa4.73□□□□□ -1.65
VPS39-202ENST00000348544 FAM236DA0A1B0GTK5 79 aa4.73□□□□□ -1.65
VPS39-202ENST00000348544 H7BZZ5 65 aa4.73□□□□□ -1.65
VPS39-202ENST00000348544 FAM236CP0DP71 79 aa4.73□□□□□ -1.65
VPS39-202ENST00000348544 PRR3P79522 188 aaKnown RBP4.73□□□□□ -1.65
VPS39-202ENST00000348544 C11orf68Q9H3H3 251 aaKnown RBP4.73□□□□□ -1.65
VPS39-202ENST00000348544 ZNF702PQ9H963 129 aa4.73□□□□□ -1.65
VPS39-202ENST00000348544 S100A7L2Q5SY68 101 aa4.73□□□□□ -1.65
VPS39-202ENST00000348544 Q8N814 137 aa4.73□□□□□ -1.65
VPS39-202ENST00000348544 A0A087WZ39 114 aa4.72□□□□□ -1.65
VPS39-202ENST00000348544 JMJD7-PLA2G4BH0Y9G9 81 aa4.72□□□□□ -1.65
VPS39-202ENST00000348544 NBL1P41271 181 aa4.72□□□□□ -1.65
VPS39-202ENST00000348544 ODF3L2Q3SX64 289 aa4.72□□□□□ -1.65
VPS39-202ENST00000348544 ZANQ9Y493 2812 aa4.72□□□□□ -1.65
VPS39-202ENST00000348544 UCNP55089 124 aa4.72□□□□□ -1.65
VPS39-202ENST00000348544 AKAP9Q99996 3911 aa4.71□□□□□ -1.65
VPS39-202ENST00000348544 TRBV10-3A0A0K0K1G6 114 aa4.71□□□□□ -1.65
VPS39-202ENST00000348544 M0R2N4 97 aa4.71□□□□□ -1.65
VPS39-202ENST00000348544 DEFB114Q30KQ6 69 aa4.71□□□□□ -1.65
VPS39-202ENST00000348544 CCL19Q99731 98 aa4.71□□□□□ -1.65
VPS39-202ENST00000348544 NOP10Q9NPE3 64 aaKnown RBP4.71□□□□□ -1.65
VPS39-202ENST00000348544 LINC00336Q6ZUF6 198 aa4.71□□□□□ -1.66
VPS39-202ENST00000348544 SERP1Q9Y6X1 66 aa4.71□□□□□ -1.66
VPS39-202ENST00000348544 MXRA5Q9NR99 2828 aa4.71□□□□□ -1.66
VPS39-202ENST00000348544 B4DSR2 109 aa4.7□□□□□ -1.66
VPS39-202ENST00000348544 TMEM256-PLSCR3K7ERE1 68 aa4.7□□□□□ -1.66
VPS39-202ENST00000348544 MRAPQ8TCY5 172 aa4.7□□□□□ -1.66
VPS39-202ENST00000348544 DYNLRB2Q8TF09 96 aa4.7□□□□□ -1.66
VPS39-202ENST00000348544 UBL5Q9BZL1 73 aa4.7□□□□□ -1.66
VPS39-202ENST00000348544 NBPF19A0A087WUL8 3843 aa4.7□□□□□ -1.66
VPS39-202ENST00000348544 PLAC8L1A1L4L8 177 aa4.7□□□□□ -1.66
VPS39-202ENST00000348544 TRAV7A0A075B6U4 112 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 TRAV10A0A0B4J240 114 aa4.69□□□□□ -1.66
VPS39-202ENST00000348544 RNASE1P07998 156 aaKnown RBP4.69□□□□□ -1.66
VPS39-202ENST00000348544 C6orf226Q5I0X4 101 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 121 ms