RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 A0A1B0GX51 115 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 K7ERS5 55 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 MIR7-3HGQ8N6C7 128 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 Q6ZVH6 145 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 LINC00304Q8N9R0 145 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 LINC00959A0A1B0GUT2 108 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 FHL2Q14192 279 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 Q5VSD8 79 aa5.93□□□□□ -1.46
HMGB1-203ENST00000341423 C20orf203Q8NBC4 194 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 SPTSSBQ8NFR3 76 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 C20orf173Q96LM9 149 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 PLXNB3Q9ULL4 1909 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 CYSRT1A8MQ03 144 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 IFITM1P13164 125 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 PSORS1C2Q9UIG4 136 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 PRSS47A8MTI9 375 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 Q6ZUT4 128 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 WDR87Q6ZQQ6 2873 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 OXTP01178 125 aa5.92□□□□□ -1.46
HMGB1-203ENST00000341423 PTPRBP23467 1997 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 PTPRSQ13332 1948 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 MRPL55Q7Z7F7 128 aaKnown RBP5.91□□□□□ -1.46
HMGB1-203ENST00000341423 C9JAW5 83 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 KRTAP1-1Q07627 177 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 FAM231DQ6ZW35 169 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 FLNCQ14315 2725 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 SNAI2O43623 268 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 OCIAD2Q56VL3 154 aa5.91□□□□□ -1.46
HMGB1-203ENST00000341423 CHD6Q8TD26 2715 aa5.9□□□□□ -1.46
HMGB1-203ENST00000341423 H2BFSP57053 126 aa5.9□□□□□ -1.46
HMGB1-203ENST00000341423 KRTAP1-3Q8IUG1 177 aa5.9□□□□□ -1.46
HMGB1-203ENST00000341423 SRP19P09132 144 aaKnown RBP5.9□□□□□ -1.46
HMGB1-203ENST00000341423 IGLC2P0DOY2 106 aa5.9□□□□□ -1.46
HMGB1-203ENST00000341423 LINC01547P58512 204 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-203ENST00000341423 C14orf132Q9NPU4 83 aa5.9□□□□□ -1.47
HMGB1-203ENST00000341423 APLNQ9ULZ1 77 aa5.9□□□□□ -1.47
HMGB1-203ENST00000341423 ATOH7Q8N100 152 aa5.9□□□□□ -1.47
HMGB1-203ENST00000341423 RNASE8Q8TDE3 154 aaKnown RBP5.9□□□□□ -1.47
HMGB1-203ENST00000341423 RBM12B-AS1Q9P1G2 102 aa5.9□□□□□ -1.47
HMGB1-203ENST00000341423 KIAA1549Q9HCM3 1950 aa5.9□□□□□ -1.47
HMGB1-203ENST00000341423 SPATA45Q537H7 98 aa5.89□□□□□ -1.47
HMGB1-203ENST00000341423 C2orf82Q6UX34 121 aa5.89□□□□□ -1.47
HMGB1-203ENST00000341423 C9orf62Q8N4C0 152 aa5.89□□□□□ -1.47
HMGB1-203ENST00000341423 Q8NAQ8 132 aa5.89□□□□□ -1.47
HMGB1-203ENST00000341423 SPANXB1Q9NS25 103 aaPredicted RBP5.89□□□□□ -1.47
HMGB1-203ENST00000341423 NPYP01303 97 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 TNP2Q05952 138 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 C5orf47Q569G3 176 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 Q6JHZ5 121 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 TEX15Q9BXT5 2789 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 C3orf79P0CE67 100 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 H3BMG7 143 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 RAI1Q7Z5J4 1906 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-203ENST00000341423 MUC22E2RYF6 1773 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-203ENST00000341423 DNAH10OSP0CZ25 163 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 PATE2Q6UY27 113 aa5.88□□□□□ -1.47
HMGB1-203ENST00000341423 C11orf52Q96A22 123 aa5.87□□□□□ -1.47
HMGB1-203ENST00000341423 TRAV23DV6A0A075B6W5 121 aa5.87□□□□□ -1.47
HMGB1-203ENST00000341423 NDUFC2-KCTD14E9PQ53 114 aa5.87□□□□□ -1.47
HMGB1-203ENST00000341423 SPANXDQ9BXN6 97 aa5.87□□□□□ -1.47
HMGB1-203ENST00000341423 Q6ZSA8 131 aa5.87□□□□□ -1.47
HMGB1-203ENST00000341423 LINC00173Q6ZV60 143 aa5.87□□□□□ -1.47
HMGB1-203ENST00000341423 A0A087WYN8 130 aa5.86□□□□□ -1.47
HMGB1-203ENST00000341423 TRAV12-1A0A0B4J245 112 aa5.86□□□□□ -1.47
HMGB1-203ENST00000341423 PRM2P04554 102 aa5.86□□□□□ -1.47
HMGB1-203ENST00000341423 TINCRA0A1B0GVN0 87 aa5.86□□□□□ -1.47
HMGB1-203ENST00000341423 KLLNB2CW77 178 aa5.86□□□□□ -1.47
HMGB1-203ENST00000341423 UQCR10Q9UDW1 63 aa5.86□□□□□ -1.47
HMGB1-203ENST00000341423 BAALC-AS2P0C853 105 aa5.85□□□□□ -1.47
HMGB1-203ENST00000341423 PDE6GP18545 87 aa5.85□□□□□ -1.47
HMGB1-203ENST00000341423 A0A096LNT2 108 aa5.85□□□□□ -1.47
HMGB1-203ENST00000341423 RPL39P62891 51 aaKnown RBP5.85□□□□□ -1.47
HMGB1-203ENST00000341423 LRP4O75096 1905 aa5.85□□□□□ -1.47
HMGB1-203ENST00000341423 SEC61BP60468 96 aaKnown RBP5.85□□□□□ -1.47
HMGB1-203ENST00000341423 Q5BKY6 102 aa5.85□□□□□ -1.47
HMGB1-203ENST00000341423 Q8N814 137 aa5.85□□□□□ -1.47
HMGB1-203ENST00000341423 IGLV7-46A0A075B6I9 117 aa5.85□□□□□ -1.47
HMGB1-203ENST00000341423 FAM19A3Q7Z5A8 133 aa5.84□□□□□ -1.47
HMGB1-203ENST00000341423 C9orf163Q8N9P6 203 aa5.84□□□□□ -1.47
HMGB1-203ENST00000341423 WFDC1Q9HC57 220 aa5.84□□□□□ -1.47
HMGB1-203ENST00000341423 COL4A2P08572 1712 aa5.84□□□□□ -1.47
HMGB1-203ENST00000341423 KIAA1549LQ6ZVL6 1849 aa5.84□□□□□ -1.47
HMGB1-203ENST00000341423 CHTF8P0CG12 524 aa5.84□□□□□ -1.47
HMGB1-203ENST00000341423 CENPEQ02224 2701 aa5.83□□□□□ -1.48
HMGB1-203ENST00000341423 FLG2Q5D862 2391 aaPredicted RBP5.83□□□□□ -1.48
HMGB1-203ENST00000341423 RNF151Q2KHN1 245 aa5.83□□□□□ -1.48
HMGB1-203ENST00000341423 UNQ6190/PRO20217Q6UXQ8 127 aa5.83□□□□□ -1.48
HMGB1-203ENST00000341423 NAA38Q9BRA0 125 aaKnown RBP5.83□□□□□ -1.48
HMGB1-203ENST00000341423 IGLC6P0CF74 106 aa5.83□□□□□ -1.48
HMGB1-203ENST00000341423 KIAA0087Q14695 138 aa5.83□□□□□ -1.48
HMGB1-203ENST00000341423 SERP1Q9Y6X1 66 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 A0A0J9YXY3 114 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 MOBPQ13875 183 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 Q8IZM0 81 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 Q9BRP9 147 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 SPANXCQ9NY87 97 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 SPCS1Q9Y6A9 102 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 COX17Q14061 63 aa5.82□□□□□ -1.48
HMGB1-203ENST00000341423 KRTAP10-3P60369 221 aa5.81□□□□□ -1.48
HMGB1-203ENST00000341423 A0A1B0GUV1 79 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms