RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 HEATR5BQ9P2D3 2071 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 G3V318 75 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 M0R2N4 97 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 CCL5P13501 91 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 HTN1P15515 57 aa2.78□□□□□ -1.96
NEDD4-201ENST00000338963 COL5A1P20908 1838 aaPredicted RBP2.78□□□□□ -1.96
NEDD4-201ENST00000338963 UQCR11O14957 56 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 ODF3L2Q3SX64 289 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 LINC00476Q8WZB0 136 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 PRAC1Q96KF2 57 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 A0A0J9YWU9 116 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 IGKV3-20P01619 116 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 C5orf56Q8N8D9 126 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 Q8NAQ8 132 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 RPL37AP8A6NKH3 93 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 C16orf74Q96GX8 76 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 C1orf137Q5JT78 98 aa2.77□□□□□ -1.97
NEDD4-201ENST00000338963 ARRDC1-AS1Q9H2J1 176 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 FREM3P0C091 2139 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 PRB1P04280 392 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 MAP6D1Q9H9H5 199 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 DSCR9P59020 149 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 VWA8A3KMH1 1905 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 ADAMTS20P59510 1910 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 K7ERS5 55 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 PROK1P58294 105 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 DEFB131AP59861 70 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 IGKV2D-24A0A075B6R9 120 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 ST20-AS1Q8NBB2 130 aa2.76□□□□□ -1.97
NEDD4-201ENST00000338963 SPATA8Q6RVD6 105 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 KIAA2026Q5HYC2 2103 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 NCKAP5O14513 1909 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 IGLV1-51P01701 117 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 PRB2P02812 416 aaPredicted RBP2.75□□□□□ -1.97
NEDD4-201ENST00000338963 LINC00528Q8N1L1 170 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 C9orf163Q8N9P6 203 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 REG3GQ6UW15 175 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 WFDC13Q8IUB5 93 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 C1orf134Q5TEV5 83 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 Q6ZSN1 163 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 SPRR4Q96PI1 79 aa2.75□□□□□ -1.97
NEDD4-201ENST00000338963 IGLV1-40P01703 118 aa2.74□□□□□ -1.97
NEDD4-201ENST00000338963 DEFB1P60022 68 aa2.74□□□□□ -1.97
NEDD4-201ENST00000338963 EGFEM1PQ0D2K5 195 aa2.74□□□□□ -1.97
NEDD4-201ENST00000338963 POLR2AP24928 1970 aaKnown RBP2.74□□□□□ -1.97
NEDD4-201ENST00000338963 PHF3Q92576 2039 aaKnown RBP2.74□□□□□ -1.97
NEDD4-201ENST00000338963 H3BUX3 64 aa2.74□□□□□ -1.97
NEDD4-201ENST00000338963 CHCHD10Q8WYQ3 142 aaPredicted RBP2.74□□□□□ -1.97
NEDD4-201ENST00000338963 A8MWP4 228 aa2.74□□□□□ -1.97
NEDD4-201ENST00000338963 DSCR10P59022 87 aa2.74□□□□□ -1.97
NEDD4-201ENST00000338963 ADAMTS9Q9P2N4 1935 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 A0A1B0GU69 56 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 SPINK7P58062 85 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 MIR22HGQ0VDD5 57 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 KLK12Q9UKR0 248 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 LRRK1Q38SD2 2015 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 ACYP2P14621 99 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 K7EQZ3 153 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 RTL8CO15255 209 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 MPDZO75970 2070 aa2.73□□□□□ -1.97
NEDD4-201ENST00000338963 A8MU10 97 aa2.72□□□□□ -1.97
NEDD4-201ENST00000338963 A0A1W2PNM2 257 aa2.72□□□□□ -1.97
NEDD4-201ENST00000338963 LINC01565O15544 149 aa2.72□□□□□ -1.97
NEDD4-201ENST00000338963 DNAJC9-AS1A6NH13 148 aa2.72□□□□□ -1.97
NEDD4-201ENST00000338963 WFDC10BQ8IUB3 73 aa2.72□□□□□ -1.97
NEDD4-201ENST00000338963 LINC00612Q8N6U2 182 aa2.72□□□□□ -1.97
NEDD4-201ENST00000338963 DMAC1Q96GE9 116 aa2.72□□□□□ -1.97
NEDD4-201ENST00000338963 DOCK8Q8NF50 2099 aa2.71□□□□□ -1.97
NEDD4-201ENST00000338963 A0A087WSZ3 146 aa2.71□□□□□ -1.98
NEDD4-201ENST00000338963 A6NDX4 124 aa2.71□□□□□ -1.98
NEDD4-201ENST00000338963 ROMO1P60602 79 aa2.71□□□□□ -1.98
NEDD4-201ENST00000338963 REG3AQ06141 175 aa2.71□□□□□ -1.98
NEDD4-201ENST00000338963 PCSK5Q92824 1860 aa2.71□□□□□ -1.98
NEDD4-201ENST00000338963 CACNA1CQ13936 2221 aa2.71□□□□□ -1.98
NEDD4-201ENST00000338963 CSAG1Q6PB30 78 aa2.7□□□□□ -1.98
NEDD4-201ENST00000338963 LTBP2Q14767 1821 aa2.7□□□□□ -1.98
NEDD4-201ENST00000338963 KRTAP29-1A8MX34 341 aaPredicted RBP2.7□□□□□ -1.98
NEDD4-201ENST00000338963 CAMK2N2Q96S95 79 aa2.7□□□□□ -1.98
NEDD4-201ENST00000338963 DOCK11Q5JSL3 2073 aa2.7□□□□□ -1.98
NEDD4-201ENST00000338963 KRTAP16-1A8MUX0 517 aa2.7□□□□□ -1.98
NEDD4-201ENST00000338963 SEC61BP60468 96 aaKnown RBP2.69□□□□□ -1.98
NEDD4-201ENST00000338963 LRP4O75096 1905 aa2.69□□□□□ -1.98
NEDD4-201ENST00000338963 CYSRT1A8MQ03 144 aa2.69□□□□□ -1.98
NEDD4-201ENST00000338963 CDK2AP2O75956 126 aa2.69□□□□□ -1.98
NEDD4-201ENST00000338963 ANGP03950 147 aaKnown RBP2.69□□□□□ -1.98
NEDD4-201ENST00000338963 C19orf73Q9NVV2 129 aa2.69□□□□□ -1.98
NEDD4-201ENST00000338963 MYOFQ9NZM1 2061 aa2.69□□□□□ -1.98
NEDD4-201ENST00000338963 B4DSR2 109 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 TNP2Q05952 138 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 DEFB105AQ8NG35 78 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 NOP10Q9NPE3 64 aaKnown RBP2.68□□□□□ -1.98
NEDD4-201ENST00000338963 PRO0255Q9UI72 69 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 HRES1P13985 223 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 IGLV10-54A0A075B6I4 117 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 IGLV1-50A0A075B6I6 118 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 IGLV5-37A0A075B6J1 123 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 LYNX1G3V0Z9 82 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 LYNX1P0DP58 116 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 KRTAP25-1Q3LHN0 102 aa2.68□□□□□ -1.98
NEDD4-201ENST00000338963 Q6ZRX8 168 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms