RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CRPP02741 224 aa10.43□□□□□ -0.74
CLN3-201ENST00000333496 CLPSL2Q6UWE3 100 aa10.43□□□□□ -0.74
CLN3-201ENST00000333496 LINC00269Q8N2A0 174 aa10.43□□□□□ -0.74
CLN3-201ENST00000333496 NTN5Q8WTR8 489 aaPredicted RBP10.43□□□□□ -0.74
CLN3-201ENST00000333496 IFI27L1Q96BM0 104 aa10.43□□□□□ -0.74
CLN3-201ENST00000333496 IGLV5-52A0A0A0MRZ9 124 aa10.42□□□□□ -0.74
CLN3-201ENST00000333496 C1orf43Q9BWL3 253 aa10.42□□□□□ -0.74
CLN3-201ENST00000333496 PRSS47A8MTI9 375 aa10.41□□□□□ -0.74
CLN3-201ENST00000333496 PPP1R17O96001 155 aa10.41□□□□□ -0.74
CLN3-201ENST00000333496 GCSHP23434 173 aa10.41□□□□□ -0.74
CLN3-201ENST00000333496 MIAQ16674 131 aa10.41□□□□□ -0.74
CLN3-201ENST00000333496 KRTAP4-5Q9BYR2 181 aa10.41□□□□□ -0.74
CLN3-201ENST00000333496 DNAH8Q96JB1 4490 aa10.41□□□□□ -0.74
CLN3-201ENST00000333496 FCER1GP30273 86 aa10.4□□□□□ -0.74
CLN3-201ENST00000333496 POLR2KP53803 58 aaKnown RBP10.4□□□□□ -0.74
CLN3-201ENST00000333496 KRTAP26-1Q6PEX3 210 aa10.4□□□□□ -0.74
CLN3-201ENST00000333496 UBE2L6O14933 153 aa10.4□□□□□ -0.75
CLN3-201ENST00000333496 NPSP0C0P6 89 aa10.4□□□□□ -0.75
CLN3-201ENST00000333496 REG3AQ06141 175 aa10.4□□□□□ -0.75
CLN3-201ENST00000333496 Q8N8P6 123 aa10.4□□□□□ -0.75
CLN3-201ENST00000333496 C20orf78Q9BR46 151 aa10.4□□□□□ -0.75
CLN3-201ENST00000333496 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.39□□□□□ -0.75
CLN3-201ENST00000333496 I3L3M4 83 aa10.39□□□□□ -0.75
CLN3-201ENST00000333496 XGP55808 180 aa10.39□□□□□ -0.75
CLN3-201ENST00000333496 BVES-AS1Q5T3Y7 98 aa10.39□□□□□ -0.75
CLN3-201ENST00000333496 SUMO2P61956 95 aaKnown RBP10.38□□□□□ -0.75
CLN3-201ENST00000333496 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.37□□□□□ -0.75
CLN3-201ENST00000333496 TRBV27A0A0K0K1C4 114 aa10.37□□□□□ -0.75
CLN3-201ENST00000333496 IGKV2-29A2NJV5 120 aaPredicted RBP10.37□□□□□ -0.75
CLN3-201ENST00000333496 TSHBP01222 138 aa10.37□□□□□ -0.75
CLN3-201ENST00000333496 SMIM2Q9BVW6 85 aa10.37□□□□□ -0.75
CLN3-201ENST00000333496 ATP5LO75964 103 aa10.36□□□□□ -0.75
CLN3-201ENST00000333496 IGLV10-54A0A075B6I4 117 aa10.36□□□□□ -0.75
CLN3-201ENST00000333496 FGF6P10767 208 aa10.36□□□□□ -0.75
CLN3-201ENST00000333496 C2orf91Q6ZV80 131 aa10.36□□□□□ -0.75
CLN3-201ENST00000333496 BOD1L2Q8IYS8 172 aa10.36□□□□□ -0.75
CLN3-201ENST00000333496 H7C423 109 aa10.35□□□□□ -0.75
CLN3-201ENST00000333496 RPL32P62910 135 aaKnown RBP10.35□□□□□ -0.75
CLN3-201ENST00000333496 SEC11AP67812 179 aa10.35□□□□□ -0.75
CLN3-201ENST00000333496 ANKRD39Q53RE8 183 aa10.35□□□□□ -0.75
CLN3-201ENST00000333496 TP73-AS1Q9UF72 201 aa10.35□□□□□ -0.75
CLN3-201ENST00000333496 K7EMI3 77 aa10.34□□□□□ -0.75
CLN3-201ENST00000333496 UBE2V1Q13404 147 aa10.34□□□□□ -0.75
CLN3-201ENST00000333496 Q8N1X5 172 aa10.34□□□□□ -0.75
CLN3-201ENST00000333496 FAM30AQ9NZY2 134 aa10.34□□□□□ -0.75
CLN3-201ENST00000333496 TRAV8-4A0A0B4J246 113 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 USP17L23D6RBM5 183 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 ODF1Q14990 250 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 LINC01620Q4KN68 170 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 PCLOQ9Y6V0 5065 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 VCYO14598 125 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 PTTG1IPP53801 180 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 AMMECR1LQ6DCA0 310 aa10.33□□□□□ -0.76
CLN3-201ENST00000333496 TAX1BP3O14907 124 aa10.32□□□□□ -0.76
CLN3-201ENST00000333496 HAMPP81172 84 aa10.32□□□□□ -0.76
CLN3-201ENST00000333496 HSD52Q0P140 79 aa10.32□□□□□ -0.76
CLN3-201ENST00000333496 FAT1Q14517 4588 aa10.31□□□□□ -0.76
CLN3-201ENST00000333496 IGKCP01834 107 aa10.31□□□□□ -0.76
CLN3-201ENST00000333496 PRSS1P07477 247 aa10.31□□□□□ -0.76
CLN3-201ENST00000333496 C14orf177Q52M58 125 aa10.31□□□□□ -0.76
CLN3-201ENST00000333496 ORMDL2Q53FV1 153 aa10.31□□□□□ -0.76
CLN3-201ENST00000333496 IGKV3OR2-268A0A0C4DH90 116 aa10.3□□□□□ -0.76
CLN3-201ENST00000333496 A6NDN8 102 aa10.3□□□□□ -0.76
CLN3-201ENST00000333496 DPM2O94777 84 aa10.3□□□□□ -0.76
CLN3-201ENST00000333496 Q6ZSA8 131 aa10.29□□□□□ -0.76
CLN3-201ENST00000333496 KIR2DL4Q99706 377 aa10.29□□□□□ -0.76
CLN3-201ENST00000333496 ABCA13Q86UQ4 5058 aa10.29□□□□□ -0.76
CLN3-201ENST00000333496 CCL25O15444 150 aa10.29□□□□□ -0.76
CLN3-201ENST00000333496 VAMP3Q15836 100 aa10.29□□□□□ -0.76
CLN3-201ENST00000333496 NMUP48645 174 aa10.28□□□□□ -0.76
CLN3-201ENST00000333496 OR5A1Q8NGJ0 315 aa10.28□□□□□ -0.76
CLN3-201ENST00000333496 HIGD1BQ9P298 99 aa10.28□□□□□ -0.76
CLN3-201ENST00000333496 TRAV12-1A0A0B4J245 112 aa10.27□□□□□ -0.77
CLN3-201ENST00000333496 LINC01549A6NIU2 74 aa10.27□□□□□ -0.77
CLN3-201ENST00000333496 PLNP26678 52 aa10.27□□□□□ -0.77
CLN3-201ENST00000333496 Q6ZVH6 145 aa10.27□□□□□ -0.77
CLN3-201ENST00000333496 TMEM101Q96IK0 257 aa10.27□□□□□ -0.77
CLN3-201ENST00000333496 CDC42SE2Q9NRR3 84 aa10.27□□□□□ -0.77
CLN3-201ENST00000333496 VPS13BQ7Z7G8 4022 aa10.27□□□□□ -0.77
CLN3-201ENST00000333496 GAGE12HA6NDE8 117 aa10.26□□□□□ -0.77
CLN3-201ENST00000333496 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.26□□□□□ -0.77
CLN3-201ENST00000333496 CHCHD10Q8WYQ3 142 aaPredicted RBP10.26□□□□□ -0.77
CLN3-201ENST00000333496 SMR3BP02814 79 aaPredicted RBP10.25□□□□□ -0.77
CLN3-201ENST00000333496 UBE2D4Q9Y2X8 147 aa10.25□□□□□ -0.77
CLN3-201ENST00000333496 LINC00959A0A1B0GUT2 108 aa10.25□□□□□ -0.77
CLN3-201ENST00000333496 H3BRM9 83 aa10.25□□□□□ -0.77
CLN3-201ENST00000333496 DGAT2L7PQ6IED9 249 aa10.25□□□□□ -0.77
CLN3-201ENST00000333496 PCP2Q8IVA1 136 aa10.25□□□□□ -0.77
CLN3-201ENST00000333496 TOMM6Q96B49 74 aa10.25□□□□□ -0.77
CLN3-201ENST00000333496 ZC2HC1BQ5TFG8 222 aa10.24□□□□□ -0.77
CLN3-201ENST00000333496 C15orf56Q8N910 161 aa10.24□□□□□ -0.77
CLN3-201ENST00000333496 CSDC2Q9Y534 153 aaKnown RBP10.24□□□□□ -0.77
CLN3-201ENST00000333496 F8VRH5 84 aa10.23□□□□□ -0.77
CLN3-201ENST00000333496 SLPIP03973 132 aa10.23□□□□□ -0.77
CLN3-201ENST00000333496 C2orf66Q6UXQ4 117 aa10.23□□□□□ -0.77
CLN3-201ENST00000333496 C9orf163Q8N9P6 203 aa10.23□□□□□ -0.77
CLN3-201ENST00000333496 MRPL35Q9NZE8 188 aaKnown RBP10.23□□□□□ -0.77
CLN3-201ENST00000333496 EPM2AB3EWF7 344 aa10.22□□□□□ -0.77
CLN3-201ENST00000333496 RPL39P62891 51 aaKnown RBP10.22□□□□□ -0.77
CLN3-201ENST00000333496 FOXI1Q12951 378 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms