RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LOC400499M0QZD8 3231 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 ENHOQ6UWT2 76 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 NKAPP1Q8N9T2 125 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 UPK3BQ9BT76 320 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 BRK1Q8WUW1 75 aa11.3□□□□□ -0.6
SHH-201ENST00000297261 PYGO1Q9Y3Y4 419 aa11.3□□□□□ -0.6
SHH-201ENST00000297261 DMXL2Q8TDJ6 3036 aa11.29□□□□□ -0.6
SHH-201ENST00000297261 PLA2G2AP14555 144 aa11.29□□□□□ -0.6
SHH-201ENST00000297261 DMDP11532 3685 aa11.29□□□□□ -0.6
SHH-201ENST00000297261 PSMG3-AS1Q96PY0 264 aa11.29□□□□□ -0.6
SHH-201ENST00000297261 KLLNB2CW77 178 aa11.29□□□□□ -0.6
SHH-201ENST00000297261 COX8CQ7Z4L0 72 aa11.29□□□□□ -0.6
SHH-201ENST00000297261 SERP2Q8N6R1 65 aa11.29□□□□□ -0.6
SHH-201ENST00000297261 RPL18AQ02543 176 aaKnown RBP11.28□□□□□ -0.6
SHH-201ENST00000297261 PRO0461Q9UI25 63 aa11.28□□□□□ -0.6
SHH-201ENST00000297261 TRBV10-1A0A0K0K1A3 114 aa11.28□□□□□ -0.6
SHH-201ENST00000297261 KLK5Q9Y337 293 aaPredicted RBP11.28□□□□□ -0.6
SHH-201ENST00000297261 ADAMTSL4-AS1Q5T5F5 129 aa11.27□□□□□ -0.61
SHH-201ENST00000297261 NREPQ16612 68 aa11.27□□□□□ -0.61
SHH-201ENST00000297261 ODF3Q96PU9 254 aa11.27□□□□□ -0.61
SHH-201ENST00000297261 SHISA2Q6UWI4 295 aa11.26□□□□□ -0.61
SHH-201ENST00000297261 FAM236DA0A1B0GTK5 79 aa11.26□□□□□ -0.61
SHH-201ENST00000297261 FAM240AA0A1B0GVK7 77 aa11.26□□□□□ -0.61
SHH-201ENST00000297261 FAM236CP0DP71 79 aa11.26□□□□□ -0.61
SHH-201ENST00000297261 ACANP16112 2415 aa11.25□□□□□ -0.61
SHH-201ENST00000297261 IGLV1-40P01703 118 aa11.25□□□□□ -0.61
SHH-201ENST00000297261 MRPS36P82909 103 aaKnown RBP11.25□□□□□ -0.61
SHH-201ENST00000297261 SCXQ7RTU7 201 aa11.25□□□□□ -0.61
SHH-201ENST00000297261 ZNF702PQ9H963 129 aa11.25□□□□□ -0.61
SHH-201ENST00000297261 PKIGQ9Y2B9 76 aa11.25□□□□□ -0.61
SHH-201ENST00000297261 MAP6D1Q9H9H5 199 aa11.25□□□□□ -0.61
SHH-201ENST00000297261 C16orf74Q96GX8 76 aa11.25□□□□□ -0.61
SHH-201ENST00000297261 TIMM17BO60830 172 aa11.24□□□□□ -0.61
SHH-201ENST00000297261 SVIPQ8NHG7 77 aa11.24□□□□□ -0.61
SHH-201ENST00000297261 C4orf3Q8WVX3 66 aa11.24□□□□□ -0.61
SHH-201ENST00000297261 CENPEQ02224 2701 aa11.24□□□□□ -0.61
SHH-201ENST00000297261 A0A087WVE0 104 aa11.24□□□□□ -0.61
SHH-201ENST00000297261 UBE2D4Q9Y2X8 147 aa11.23□□□□□ -0.61
SHH-201ENST00000297261 C9orf85Q96MD7 179 aa11.23□□□□□ -0.61
SHH-201ENST00000297261 WFDC9Q8NEX5 89 aa11.23□□□□□ -0.61
SHH-201ENST00000297261 MPLKIPQ8TAP9 179 aa11.22□□□□□ -0.61
SHH-201ENST00000297261 A0A0U1RQV1 116 aa11.22□□□□□ -0.61
SHH-201ENST00000297261 WDFY3Q8IZQ1 3526 aa11.22□□□□□ -0.61
SHH-201ENST00000297261 EDN2P20800 178 aa11.21□□□□□ -0.61
SHH-201ENST00000297261 LOC107984640A0A0U1RRK4 108 aa11.21□□□□□ -0.61
SHH-201ENST00000297261 SPAG11BQ08648 103 aa11.21□□□□□ -0.61
SHH-201ENST00000297261 ADGRG4Q8IZF6 3080 aa11.21□□□□□ -0.61
SHH-201ENST00000297261 SMIM11BQ8TCY0 68 aa11.21□□□□□ -0.62
SHH-201ENST00000297261 CAMK2N2Q96S95 79 aa11.21□□□□□ -0.62
SHH-201ENST00000297261 FAM110AQ9BQ89 295 aa11.21□□□□□ -0.62
SHH-201ENST00000297261 HRCT1Q6UXD1 115 aa11.2□□□□□ -0.62
SHH-201ENST00000297261 DEFB4AO15263 64 aa11.2□□□□□ -0.62
SHH-201ENST00000297261 NDUFC2O95298 119 aa11.2□□□□□ -0.62
SHH-201ENST00000297261 FUSP35637 526 aaKnown RBP eCLIP11.2□□□□□ -0.62
SHH-201ENST00000297261 C18orf65Q6ZTR6 163 aa11.2□□□□□ -0.62
SHH-201ENST00000297261 PPDPFQ9H3Y8 114 aa11.2□□□□□ -0.62
SHH-201ENST00000297261 DCANP1Q8TF63 244 aa11.2□□□□□ -0.62
SHH-201ENST00000297261 SNURFQ9Y675 71 aa11.2□□□□□ -0.62
SHH-201ENST00000297261 C6orf99Q4VX62 202 aa11.19□□□□□ -0.62
SHH-201ENST00000297261 IBA57-AS1B1ANH7 110 aa11.19□□□□□ -0.62
SHH-201ENST00000297261 LINC00526Q96FQ7 95 aa11.19□□□□□ -0.62
SHH-201ENST00000297261 SMIM9A6NGZ8 99 aa11.18□□□□□ -0.62
SHH-201ENST00000297261 DIRC1Q969H9 104 aa11.18□□□□□ -0.62
SHH-201ENST00000297261 CXCL5P42830 114 aa11.18□□□□□ -0.62
SHH-201ENST00000297261 FAM19A5Q7Z5A7 132 aaPredicted RBP11.18□□□□□ -0.62
SHH-201ENST00000297261 KLK12Q9UKR0 248 aa11.17□□□□□ -0.62
SHH-201ENST00000297261 LINC00242Q5T6M2 205 aa11.17□□□□□ -0.62
SHH-201ENST00000297261 HIGD2BQ4VC39 106 aa11.16□□□□□ -0.62
SHH-201ENST00000297261 IGKV2D-24A0A075B6R9 120 aa11.16□□□□□ -0.62
SHH-201ENST00000297261 LINC00269Q8N2A0 174 aa11.16□□□□□ -0.62
SHH-201ENST00000297261 FAM222AQ5U5X8 452 aa11.15□□□□□ -0.62
SHH-201ENST00000297261 ATP5EP2Q5VTU8 51 aa11.15□□□□□ -0.62
SHH-201ENST00000297261 PDE6GP18545 87 aa11.14□□□□□ -0.63
SHH-201ENST00000297261 CCL18P55774 89 aa11.14□□□□□ -0.63
SHH-201ENST00000297261 MAP1AP78559 2803 aaPredicted RBP11.14□□□□□ -0.63
SHH-201ENST00000297261 INAFM1C9JVW0 142 aa11.13□□□□□ -0.63
SHH-201ENST00000297261 SMR3AQ99954 134 aa11.13□□□□□ -0.63
SHH-201ENST00000297261 MUC4Q99102 2169 aa11.13□□□□□ -0.63
SHH-201ENST00000297261 COX6A2Q02221 97 aa11.12□□□□□ -0.63
SHH-201ENST00000297261 DEFB114Q30KQ6 69 aa11.12□□□□□ -0.63
SHH-201ENST00000297261 UBE2BP63146 152 aa11.12□□□□□ -0.63
SHH-201ENST00000297261 LOC100131303A0A0U1RQF7 123 aa11.12□□□□□ -0.63
SHH-201ENST00000297261 XAGE1AQ9HD64 81 aa11.12□□□□□ -0.63
SHH-201ENST00000297261 ETDCA0A1B0GVM5 59 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 SMIM1B2RUZ4 78 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 LINC01006Q8NI28 216 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 PRO0255Q9UI72 69 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 BPY2O14599 106 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 Q6JHZ5 121 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 USP24Q9UPU5 2620 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 APOC4P55056 127 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 LINC01546A6NGU7 62 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 LY6G6DO95868 133 aa11.11□□□□□ -0.63
SHH-201ENST00000297261 TRBV6-8A0A0A6YYG3 113 aa11.1□□□□□ -0.63
SHH-201ENST00000297261 CDK2AP2O75956 126 aa11.1□□□□□ -0.63
SHH-201ENST00000297261 Q6ZQY7 126 aa11.1□□□□□ -0.63
SHH-201ENST00000297261 AMELXQ99217 191 aa11.1□□□□□ -0.63
SHH-201ENST00000297261 COX7BP24311 80 aa11.1□□□□□ -0.63
SHH-201ENST00000297261 PSCAO43653 123 aa11.1□□□□□ -0.63
SHH-201ENST00000297261 BRI3O95415 125 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms