RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CDKN2A-AS1Q9UH64 79 aa9.64□□□□□ -0.87
SS18-201ENST00000269137 LINC00959A0A1B0GUT2 108 aa9.63□□□□□ -0.87
SS18-201ENST00000269137 LEPROTO15243 131 aa9.63□□□□□ -0.87
SS18-201ENST00000269137 Q8N3U1 123 aa9.63□□□□□ -0.87
SS18-201ENST00000269137 MAPKAPK5-AS1Q8N8E1 139 aa9.63□□□□□ -0.87
SS18-201ENST00000269137 IGHV1-58A0A0C4DH39 117 aa9.62□□□□□ -0.87
SS18-201ENST00000269137 A6NDN8 102 aa9.62□□□□□ -0.87
SS18-201ENST00000269137 IGLL5B9A064 214 aa9.62□□□□□ -0.87
SS18-201ENST00000269137 ANGP03950 147 aaKnown RBP9.62□□□□□ -0.87
SS18-201ENST00000269137 LINC00269Q8N2A0 174 aa9.62□□□□□ -0.87
SS18-201ENST00000269137 PLEKHB2Q96CS7 222 aa9.62□□□□□ -0.87
SS18-201ENST00000269137 IGKV3OR2-268A0A0C4DH90 116 aa9.61□□□□□ -0.87
SS18-201ENST00000269137 J3QQQ9 107 aa9.61□□□□□ -0.87
SS18-201ENST00000269137 UBE2V1Q13404 147 aa9.61□□□□□ -0.87
SS18-201ENST00000269137 WFDC10BQ8IUB3 73 aa9.61□□□□□ -0.87
SS18-201ENST00000269137 IGHV3OR16-9A0A0B4J2B5 98 aa9.61□□□□□ -0.87
SS18-201ENST00000269137 MYMXA0A1B0GTQ4 84 aa9.61□□□□□ -0.87
SS18-201ENST00000269137 SS18Q15532 418 aa9.61□□□□□ -0.87
SS18-201ENST00000269137 DNAH7Q8WXX0 4024 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 IGLV5-39A0A0G2JS06 123 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 SPINK8P0C7L1 97 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 IGHV3-30-3P0DP02 117 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 PTTG1IPP53801 180 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 TSPEAR-AS2P59090 65 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 REG3AQ06141 175 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 PRR34Q9NV39 138 aa9.6□□□□□ -0.87
SS18-201ENST00000269137 TRAV8-3A0A0A6YYJ7 113 aa9.59□□□□□ -0.87
SS18-201ENST00000269137 VAMP3Q15836 100 aa9.59□□□□□ -0.87
SS18-201ENST00000269137 IGHV3-64A0A075B6Q5 118 aa9.59□□□□□ -0.88
SS18-201ENST00000269137 ZNF815PA8K554 130 aa9.59□□□□□ -0.88
SS18-201ENST00000269137 LGALS3P17931 250 aaKnown RBP9.59□□□□□ -0.88
SS18-201ENST00000269137 LINC01556Q5JQF7 62 aa9.59□□□□□ -0.88
SS18-201ENST00000269137 SMIM1B2RUZ4 78 aa9.58□□□□□ -0.88
SS18-201ENST00000269137 CCL18P55774 89 aa9.58□□□□□ -0.88
SS18-201ENST00000269137 CLPSL2Q6UWE3 100 aa9.58□□□□□ -0.88
SS18-201ENST00000269137 KLK12Q9UKR0 248 aa9.58□□□□□ -0.88
SS18-201ENST00000269137 FBN3Q75N90 2809 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 A0A087WZ39 114 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 IGHV3-30P01768 117 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 IGHV3-33P01772 117 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 IGHV3-30-5P0DP03 117 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 GCSHP23434 173 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 TAL2Q16559 108 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 LINC00588Q9Y4M8 146 aa9.57□□□□□ -0.88
SS18-201ENST00000269137 DNAH10OSP0CZ25 163 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 CD164L2Q6UWJ8 174 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 CEND1Q8N111 149 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 LINC01561Q8N1V8 128 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 TM2D2Q9BX73 214 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 C9orf118A6NHY6 69 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 XCL1P47992 114 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 FXYD2P54710 66 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 ENHOQ6UWT2 76 aa9.56□□□□□ -0.88
SS18-201ENST00000269137 CHCHD10Q8WYQ3 142 aaPredicted RBP9.56□□□□□ -0.88
SS18-201ENST00000269137 ZFAND6Q6FIF0 208 aa9.55□□□□□ -0.88
SS18-201ENST00000269137 UPK3BQ9BT76 320 aa9.55□□□□□ -0.88
SS18-201ENST00000269137 TRAV8-4A0A0B4J246 113 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 NUPR2A6NF83 97 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 APLNQ9ULZ1 77 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 CSMD3Q7Z407 3707 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 K7EP13 123 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 CRPP02741 224 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 SMIM13P0DJ93 91 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 C5orf38Q86SI9 138 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 NDUFA12Q9UI09 145 aa9.54□□□□□ -0.88
SS18-201ENST00000269137 MIAQ16674 131 aa9.53□□□□□ -0.88
SS18-201ENST00000269137 SCGB1D4Q6XE38 83 aa9.53□□□□□ -0.88
SS18-201ENST00000269137 UBE2WQ96B02 151 aa9.53□□□□□ -0.88
SS18-201ENST00000269137 KLK5Q9Y337 293 aaPredicted RBP9.53□□□□□ -0.88
SS18-201ENST00000269137 IGLV10-54A0A075B6I4 117 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 RAB37Q96AX2 223 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 HIST1H4GQ99525 98 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 PLECQ15149 4684 aaKnown RBP9.52□□□□□ -0.89
SS18-201ENST00000269137 H3BUT2 72 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 COX7A2LO14548 114 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 NDUFA1O15239 70 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 FOXI1Q12951 378 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 C10orf126Q8N4M7 172 aa9.52□□□□□ -0.89
SS18-201ENST00000269137 COX7B2Q8TF08 81 aa9.5□□□□□ -0.89
SS18-201ENST00000269137 A0A0J9YXY3 114 aa9.49□□□□□ -0.89
SS18-201ENST00000269137 GAGE12HA6NDE8 117 aa9.49□□□□□ -0.89
SS18-201ENST00000269137 NHP2Q9NX24 153 aaKnown RBP9.49□□□□□ -0.89
SS18-201ENST00000269137 ZNF625Q96I27 306 aaPredicted RBP9.49□□□□□ -0.89
SS18-201ENST00000269137 NAA38Q9BRA0 125 aaKnown RBP9.49□□□□□ -0.89
SS18-201ENST00000269137 SPANXB1Q9NS25 103 aaPredicted RBP9.49□□□□□ -0.89
SS18-201ENST00000269137 TENM2Q9NT68 2774 aa9.48□□□□□ -0.89
SS18-201ENST00000269137 GAGE10A6NGK3 116 aa9.48□□□□□ -0.89
SS18-201ENST00000269137 Q9H8V8 135 aa9.48□□□□□ -0.89
SS18-201ENST00000269137 A0A1W2PPM0 123 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 IBA57-AS1B1ANH7 110 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 K7ERJ3 54 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 KRTAP26-1Q6PEX3 210 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 GTF2H5Q6ZYL4 71 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 TIMM17BO60830 172 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 MALP21145 153 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 HERV-K104P63124 156 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 SFTA2Q6UW10 78 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 Q8IZM0 81 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 TOMM7Q9P0U1 55 aa9.47□□□□□ -0.89
SS18-201ENST00000269137 STARD9Q9P2P6 4700 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms