RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 C11orf68Q9H3H3 251 aaKnown RBP10.41□□□□□ -0.74
CCDC47-201ENST00000225726 TINCRA0A1B0GVN0 87 aa10.4□□□□□ -0.74
CCDC47-201ENST00000225726 VSIG2Q96IQ7 327 aa10.4□□□□□ -0.74
CCDC47-201ENST00000225726 HIGD1BQ9P298 99 aa10.4□□□□□ -0.74
CCDC47-201ENST00000225726 COL6A5A8TX70 2615 aa10.4□□□□□ -0.74
CCDC47-201ENST00000225726 MAPKAPK5-AS1Q8N8E1 139 aa10.4□□□□□ -0.74
CCDC47-201ENST00000225726 TMEM101Q96IK0 257 aa10.4□□□□□ -0.74
CCDC47-201ENST00000225726 MDFIQ99750 246 aa10.4□□□□□ -0.74
CCDC47-201ENST00000225726 TMEM223A0PJW6 202 aa10.39□□□□□ -0.75
CCDC47-201ENST00000225726 UBE2D1P51668 147 aa10.39□□□□□ -0.75
CCDC47-201ENST00000225726 NBEAL2Q6ZNJ1 2754 aa10.39□□□□□ -0.75
CCDC47-201ENST00000225726 F5H768 121 aa10.39□□□□□ -0.75
CCDC47-201ENST00000225726 SCGB1A1P11684 91 aa10.39□□□□□ -0.75
CCDC47-201ENST00000225726 CDC42SE2Q9NRR3 84 aa10.38□□□□□ -0.75
CCDC47-201ENST00000225726 A0A0J9YY99 117 aa10.38□□□□□ -0.75
CCDC47-201ENST00000225726 MYMXA0A1B0GTQ4 84 aa10.38□□□□□ -0.75
CCDC47-201ENST00000225726 PKD1L1Q8TDX9 2849 aa10.38□□□□□ -0.75
CCDC47-201ENST00000225726 KPRPQ5T749 579 aaPredicted RBP10.38□□□□□ -0.75
CCDC47-201ENST00000225726 C12orf74Q32Q52 190 aa10.37□□□□□ -0.75
CCDC47-201ENST00000225726 FAM19A3Q7Z5A8 133 aa10.37□□□□□ -0.75
CCDC47-201ENST00000225726 CHCHD5Q9BSY4 110 aa10.37□□□□□ -0.75
CCDC47-201ENST00000225726 LEPROTO15243 131 aa10.37□□□□□ -0.75
CCDC47-201ENST00000225726 PSMB2P49721 201 aa10.37□□□□□ -0.75
CCDC47-201ENST00000225726 HTN3P15516 51 aa10.36□□□□□ -0.75
CCDC47-201ENST00000225726 TIRAPP58753 221 aa10.36□□□□□ -0.75
CCDC47-201ENST00000225726 K7EIL1 84 aa10.35□□□□□ -0.75
CCDC47-201ENST00000225726 ZNF815PA8K554 130 aa10.35□□□□□ -0.75
CCDC47-201ENST00000225726 ERG28Q9UKR5 140 aa10.35□□□□□ -0.75
CCDC47-201ENST00000225726 H7C2G1 150 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 TSPAN13O95857 204 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 PRB2P02812 416 aaPredicted RBP10.34□□□□□ -0.75
CCDC47-201ENST00000225726 TTC32Q5I0X7 151 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 ZFAND6Q6FIF0 208 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 PLEKHB2Q96CS7 222 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 IGLV5-45A0A087WSX0 123 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 A0A096LPF7 62 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 J3QQQ9 107 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 TSPEAR-AS2P59090 65 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 ICOSQ9Y6W8 199 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 HERVK_113P63121 156 aa10.34□□□□□ -0.75
CCDC47-201ENST00000225726 LGALS3P17931 250 aaKnown RBP10.33□□□□□ -0.76
CCDC47-201ENST00000225726 SPATA25Q9BR10 227 aa10.33□□□□□ -0.76
CCDC47-201ENST00000225726 LINC00242Q5T6M2 205 aa10.32□□□□□ -0.76
CCDC47-201ENST00000225726 A0A0J9YWU9 116 aa10.32□□□□□ -0.76
CCDC47-201ENST00000225726 TRAV13-1A0A0B4J241 112 aa10.32□□□□□ -0.76
CCDC47-201ENST00000225726 LOC107984640A0A0U1RRK4 108 aa10.32□□□□□ -0.76
CCDC47-201ENST00000225726 IGLV4-60A0A075B6I1 120 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 HIST1H4GQ99525 98 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 TAL2Q16559 108 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 TM2D3Q9BRN9 247 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 IGHV3-64A0A075B6Q5 118 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 IGHV1-58A0A0C4DH39 117 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 COX6A2Q02221 97 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 CDKN2A-AS1Q9UH64 79 aa10.31□□□□□ -0.76
CCDC47-201ENST00000225726 A0A1B0GUV1 79 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 IGHV3-30-3P0DP02 117 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 TM2D2Q9BX73 214 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 H3BNG1 76 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 MEIG1Q5JSS6 88 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 CDIP1Q9H305 208 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 DEFB121Q5J5C9 76 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 SCGB1D4Q6XE38 83 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 Q6ZTC4 211 aa10.3□□□□□ -0.76
CCDC47-201ENST00000225726 TMEM262E9PQX1 116 aa10.29□□□□□ -0.76
CCDC47-201ENST00000225726 TRAV8-3A0A0A6YYJ7 113 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 FOXI1Q12951 378 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 IGLL5B9A064 214 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 GAGE2BQ13066 116 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 GAGE2EQ4V326 116 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 CEND1Q8N111 149 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 C11orf45Q8TAV5 145 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 GAGE2DQ9UEU5 116 aa10.28□□□□□ -0.76
CCDC47-201ENST00000225726 LELP1Q5T871 98 aa10.27□□□□□ -0.76
CCDC47-201ENST00000225726 SCGB1C2P0DMR2 95 aa10.27□□□□□ -0.77
CCDC47-201ENST00000225726 F8W1H4 67 aa10.26□□□□□ -0.77
CCDC47-201ENST00000225726 NANOS2P60321 138 aaKnown RBP10.26□□□□□ -0.77
CCDC47-201ENST00000225726 MRAPQ8TCY5 172 aa10.26□□□□□ -0.77
CCDC47-201ENST00000225726 IGLV5-39A0A0G2JS06 123 aa10.25□□□□□ -0.77
CCDC47-201ENST00000225726 SNCGO76070 127 aa10.25□□□□□ -0.77
CCDC47-201ENST00000225726 IGKV3OR2-268A0A0C4DH90 116 aa10.24□□□□□ -0.77
CCDC47-201ENST00000225726 SMIM1B2RUZ4 78 aa10.24□□□□□ -0.77
CCDC47-201ENST00000225726 LINC00959A0A1B0GUT2 108 aa10.24□□□□□ -0.77
CCDC47-201ENST00000225726 NDUFA12Q9UI09 145 aa10.24□□□□□ -0.77
CCDC47-201ENST00000225726 LYPD5Q6UWN5 251 aa10.23□□□□□ -0.77
CCDC47-201ENST00000225726 KLK5Q9Y337 293 aaPredicted RBP10.23□□□□□ -0.77
CCDC47-201ENST00000225726 DEFB131BA0A096LNP1 70 aa10.23□□□□□ -0.77
CCDC47-201ENST00000225726 C10orf126Q8N4M7 172 aa10.23□□□□□ -0.77
CCDC47-201ENST00000225726 SS18Q15532 418 aa10.22□□□□□ -0.77
CCDC47-201ENST00000225726 A0A0J9YXY3 114 aa10.21□□□□□ -0.77
CCDC47-201ENST00000225726 NHLRC4P0CG21 123 aaPredicted RBP10.21□□□□□ -0.77
CCDC47-201ENST00000225726 NOTCH1P46531 2555 aa10.21□□□□□ -0.77
CCDC47-201ENST00000225726 NDUFV3P56181 108 aaKnown RBP10.21□□□□□ -0.78
CCDC47-201ENST00000225726 NDUFA1O15239 70 aa10.2□□□□□ -0.78
CCDC47-201ENST00000225726 IGHV3OR16-9A0A0B4J2B5 98 aa10.2□□□□□ -0.78
CCDC47-201ENST00000225726 ANGP03950 147 aaKnown RBP10.2□□□□□ -0.78
CCDC47-201ENST00000225726 TRAV10A0A0B4J240 114 aa10.19□□□□□ -0.78
CCDC47-201ENST00000225726 LINC00269Q8N2A0 174 aa10.19□□□□□ -0.78
CCDC47-201ENST00000225726 Q8N3U1 123 aa10.19□□□□□ -0.78
CCDC47-201ENST00000225726 A0A087WZ39 114 aa10.18□□□□□ -0.78
CCDC47-201ENST00000225726 A4D1N5 150 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms