RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 HLA-DRB4X5D2U9 266 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 IGLV2-18A0A075B6J9 118 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 LGALS9O00182 355 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 PPP1R17O96001 155 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 S100A4P26447 101 aaKnown RBP8.48□□□□□ -1.05
LINC00538-201ENST00000626109 C3orf22Q8N5N4 141 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 C11orf68Q9H3H3 251 aaKnown RBP8.48□□□□□ -1.05
LINC00538-201ENST00000626109 LAMTOR3Q9UHA4 124 aa8.48□□□□□ -1.05
LINC00538-201ENST00000626109 ORMDL2Q53FV1 153 aa8.47□□□□□ -1.05
LINC00538-201ENST00000626109 UFSP1Q6NVU6 142 aa8.47□□□□□ -1.05
LINC00538-201ENST00000626109 NRACQ8N912 160 aa8.47□□□□□ -1.05
LINC00538-201ENST00000626109 C11orf72Q8NBR9 251 aa8.47□□□□□ -1.05
LINC00538-201ENST00000626109 GAS8-AS1O95177 125 aa8.46□□□□□ -1.05
LINC00538-201ENST00000626109 PLNP26678 52 aa8.46□□□□□ -1.05
LINC00538-201ENST00000626109 ASIPP42127 132 aa8.46□□□□□ -1.05
LINC00538-201ENST00000626109 INSL3P51460 131 aa8.46□□□□□ -1.05
LINC00538-201ENST00000626109 C20orf78Q9BR46 151 aa8.46□□□□□ -1.05
LINC00538-201ENST00000626109 HHLA3Q9XRX5 114 aa8.46□□□□□ -1.05
LINC00538-201ENST00000626109 H3BVH4 76 aa8.46□□□□□ -1.06
LINC00538-201ENST00000626109 SMIM13P0DJ93 91 aa8.46□□□□□ -1.06
LINC00538-201ENST00000626109 PCP2Q8IVA1 136 aa8.46□□□□□ -1.06
LINC00538-201ENST00000626109 TRAV8-3A0A0A6YYJ7 113 aa8.45□□□□□ -1.06
LINC00538-201ENST00000626109 TEX48A0A1B0GUV7 120 aa8.45□□□□□ -1.06
LINC00538-201ENST00000626109 DPH3P1Q9H4G8 78 aa8.45□□□□□ -1.06
LINC00538-201ENST00000626109 PHLDA3Q9Y5J5 127 aa8.45□□□□□ -1.06
LINC00538-201ENST00000626109 COL6A5A8TX70 2615 aa8.45□□□□□ -1.06
LINC00538-201ENST00000626109 TRAV12-1A0A0B4J245 112 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 APOMO95445 188 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 ZC2HC1BQ5TFG8 222 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 SMIM2Q9BVW6 85 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 TENM1Q9UKZ4 2725 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 H3BUT2 72 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 M0R381 172 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 Q6Q795 121 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 Q6ZUT4 128 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 ZFAND2AQ8N6M9 145 aa8.44□□□□□ -1.06
LINC00538-201ENST00000626109 LINC01549A6NIU2 74 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 SOCS3O14543 225 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 P0DMU3 169 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 FAM231AP0DMU4 169 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 FAM231CP0DMU5 169 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 GTSCR1Q86UQ5 136 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 PRR15Q8IV56 129 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 DPH3Q96FX2 82 aa8.43□□□□□ -1.06
LINC00538-201ENST00000626109 SMIM26A0A096LP01 95 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 IGLV9-49A0A0B4J1Y8 123 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 K7EP34 96 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 MT-ATP8P03928 68 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 FABP2P12104 132 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 CHAC1Q9BUX1 264 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 MRPL35Q9NZE8 188 aaKnown RBP8.42□□□□□ -1.06
LINC00538-201ENST00000626109 SELENOKQ9Y6D0 94 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 TRBV25-1A0A075B6N4 114 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 E9PLD3 99 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 RNASE4P34096 147 aaKnown RBP8.42□□□□□ -1.06
LINC00538-201ENST00000626109 PRR9Q5T870 116 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 DYNLRB2Q8TF09 96 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 TOMM6Q96B49 74 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 SCGB3A1Q96QR1 104 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 RHPN1-AS1Q9BWJ2 59 aa8.42□□□□□ -1.06
LINC00538-201ENST00000626109 IGKV2D-26A0A0A0MRZ7 120 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 A0A1W2PPM0 123 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 F8VRH5 84 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 INAFM2P0DMQ5 153 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 C6orf223Q8N319 242 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 C10orf126Q8N4M7 172 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 LINC00337Q8N6G1 96 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 WFDC9Q8NEX5 89 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 RAB37Q96AX2 223 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 STAB1Q9NY15 2570 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 C9orf66Q5T8R8 295 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 CEND1Q8N111 149 aa8.41□□□□□ -1.06
LINC00538-201ENST00000626109 C14orf178Q8N769 122 aaPredicted RBP8.4□□□□□ -1.06
LINC00538-201ENST00000626109 CHCHD10Q8WYQ3 142 aaPredicted RBP8.4□□□□□ -1.06
LINC00538-201ENST00000626109 SPCS1Q9Y6A9 102 aa8.4□□□□□ -1.06
LINC00538-201ENST00000626109 TRBV20-1A0A075B6N2 111 aa8.39□□□□□ -1.07
LINC00538-201ENST00000626109 MGPP08493 103 aa8.39□□□□□ -1.07
LINC00538-201ENST00000626109 Q6ZQT7 251 aa8.39□□□□□ -1.07
LINC00538-201ENST00000626109 TM2D3Q9BRN9 247 aa8.39□□□□□ -1.07
LINC00538-201ENST00000626109 PRR3P79522 188 aaKnown RBP8.39□□□□□ -1.07
LINC00538-201ENST00000626109 PSMB2P49721 201 aa8.38□□□□□ -1.07
LINC00538-201ENST00000626109 C2orf66Q6UXQ4 117 aa8.38□□□□□ -1.07
LINC00538-201ENST00000626109 POM121L12Q8N7R1 296 aa8.38□□□□□ -1.07
LINC00538-201ENST00000626109 GNRH2O43555 120 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 NXPH4O95158 308 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 FXYD2P54710 66 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 DEFB114Q30KQ6 69 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 C6orf99Q4VX62 202 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 C9orf153Q5TBE3 101 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 HIST1H4GQ99525 98 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 WNK1Q9H4A3 2382 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 IGKV3-7A0A075B6H7 116 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 MYMXA0A1B0GTQ4 84 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 KLLNB2CW77 178 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 IGLV1-51P01701 117 aa8.37□□□□□ -1.07
LINC00538-201ENST00000626109 RNASE3P12724 160 aaKnown RBP8.37□□□□□ -1.07
LINC00538-201ENST00000626109 MP68P56378 58 aa8.36□□□□□ -1.07
LINC00538-201ENST00000626109 KTN1-AS1Q86SY8 53 aa8.36□□□□□ -1.07
LINC00538-201ENST00000626109 RPL39LQ96EH5 51 aaKnown RBP8.36□□□□□ -1.07
LINC00538-201ENST00000626109 ODF3Q96PU9 254 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms