RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SEC11AP67812 179 aa5.33□□□□□ -1.56
CLK1-215ENST00000621181 TMEM97Q5BJF2 176 aa5.33□□□□□ -1.56
CLK1-215ENST00000621181 ZFAND2AQ8N6M9 145 aa5.33□□□□□ -1.56
CLK1-215ENST00000621181 FAM19A4Q96LR4 140 aa5.33□□□□□ -1.56
CLK1-215ENST00000621181 LENEPQ9Y5L5 61 aa5.33□□□□□ -1.56
CLK1-215ENST00000621181 DNAH5Q8TE73 4624 aa5.33□□□□□ -1.56
CLK1-215ENST00000621181 TRAV8-6A0A0B4J262 113 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 EVI2AP22794 236 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 GCSHP23434 173 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 LEPP41159 167 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 MYCBP2O75592 4640 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 HAMPP81172 84 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 TMEM78Q5T7P6 136 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 PCP2Q8IVA1 136 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 ODF3Q96PU9 254 aa5.32□□□□□ -1.56
CLK1-215ENST00000621181 IGKV2D-26A0A0A0MRZ7 120 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 IGHV3-53P01767 116 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 HSD52Q0P140 79 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 VAMP3Q15836 100 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 AMMECR1LQ6DCA0 310 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 UFSP1Q6NVU6 142 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 ERASQ7Z444 233 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 C11orf72Q8NBR9 251 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 LINC00477Q96M19 166 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 PRO0255Q9UI72 69 aa5.31□□□□□ -1.56
CLK1-215ENST00000621181 C7orf71A4D174 169 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 H3BRM9 83 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 MRPL23Q16540 153 aaKnown RBP5.3□□□□□ -1.56
CLK1-215ENST00000621181 LYPD5Q6UWN5 251 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 NEGR1Q7Z3B1 354 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 HIGD1BQ9P298 99 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 TRBV7-9A0A0J9YWB2 115 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 C9orf118A6NHY6 69 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 SMIM17P0DL12 118 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 MRAP2Q96G30 205 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 LINC00467Q9BRT7 94 aa5.3□□□□□ -1.56
CLK1-215ENST00000621181 IGLV5-52A0A0A0MRZ9 124 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 TRAV26-2A0A0B4J265 109 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 PSCAO43653 123 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 ATP5LO75964 103 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 CRYBA4P53673 196 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 LAGE3Q14657 143 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 ANXA2RQ3ZCQ2 193 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 OR4C5Q8NGB2 326 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 MRPL16Q9NX20 251 aaKnown RBP5.29□□□□□ -1.56
CLK1-215ENST00000621181 CBY1Q9Y3M2 126 aa5.29□□□□□ -1.56
CLK1-215ENST00000621181 TRGV4A0A0C4DH28 118 aa5.28□□□□□ -1.56
CLK1-215ENST00000621181 KLLNB2CW77 178 aa5.28□□□□□ -1.56
CLK1-215ENST00000621181 H3BVH4 76 aa5.28□□□□□ -1.56
CLK1-215ENST00000621181 IGKCP01834 107 aa5.28□□□□□ -1.56
CLK1-215ENST00000621181 RNASE4P34096 147 aaKnown RBP5.28□□□□□ -1.56
CLK1-215ENST00000621181 WFDC10BQ8IUB3 73 aa5.28□□□□□ -1.56
CLK1-215ENST00000621181 RASL10AQ92737 203 aa5.28□□□□□ -1.56
CLK1-215ENST00000621181 SMIM2Q9BVW6 85 aa5.28□□□□□ -1.56
CLK1-215ENST00000621181 A0A087WX48 190 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 TRAV12-1A0A0B4J245 112 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 TRAV21A0A0B4J279 112 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 DPM2O94777 84 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 CRYGDP07320 174 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 C10orf126Q8N4M7 172 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 C20orf78Q9BR46 151 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 MRPL35Q9NZE8 188 aaKnown RBP5.27□□□□□ -1.57
CLK1-215ENST00000621181 KIF25-AS1Q9Y6Z4 181 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 A6NDN8 102 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 H3BS24 57 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 K7EQD1 137 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 M0R381 172 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 PRSS1P07477 247 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 RNASE3P12724 160 aaKnown RBP5.27□□□□□ -1.57
CLK1-215ENST00000621181 NMUP48645 174 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 FHL2Q14192 279 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 SPANXN1Q5VSR9 72 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 SMIM15Q7Z3B0 74 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 NTN5Q8WTR8 489 aaPredicted RBP5.27□□□□□ -1.57
CLK1-215ENST00000621181 TM2D2Q9BX73 214 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 TTTY13Q9BZ97 58 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 CST9LQ9H4G1 147 aa5.27□□□□□ -1.57
CLK1-215ENST00000621181 TRBV25-1A0A075B6N4 114 aa5.26□□□□□ -1.57
CLK1-215ENST00000621181 K7EMI3 77 aa5.26□□□□□ -1.57
CLK1-215ENST00000621181 PLA2G1BP04054 148 aaKnown RBP5.26□□□□□ -1.57
CLK1-215ENST00000621181 GYPEP15421 78 aa5.26□□□□□ -1.57
CLK1-215ENST00000621181 FXYD2P54710 66 aa5.26□□□□□ -1.57
CLK1-215ENST00000621181 RPL32P62910 135 aaKnown RBP5.26□□□□□ -1.57
CLK1-215ENST00000621181 ZNF415Q09FC8 603 aa5.26□□□□□ -1.57
CLK1-215ENST00000621181 OCIAD2Q56VL3 154 aa5.26□□□□□ -1.57
CLK1-215ENST00000621181 TOMM6Q96B49 74 aa5.26□□□□□ -1.57
CLK1-215ENST00000621181 IGHV1OR15-1A0A075B7D0 117 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 K7EP34 96 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 SUMO2P61956 95 aaKnown RBP5.25□□□□□ -1.57
CLK1-215ENST00000621181 ZC2HC1BQ5TFG8 222 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 NEXN-AS1Q8NBZ9 246 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 DPH3P1Q9H4G8 78 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 IGHV3-38A0A0C4DH36 116 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 LRCOL1A6NCL2 159 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 GNRH2O43555 120 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 ASIPP42127 132 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 RPL39LQ96EH5 51 aaKnown RBP5.25□□□□□ -1.57
CLK1-215ENST00000621181 ZNF479Q96JC4 524 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 CHAC1Q9BUX1 264 aa5.25□□□□□ -1.57
CLK1-215ENST00000621181 FAT1Q14517 4588 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms