RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TRBV10-1A0A0K0K1A3 114 aa11.27□□□□□ -0.61
CPSF1-213ENST00000620219 H3BUT2 72 aa11.27□□□□□ -0.61
CPSF1-213ENST00000620219 IGLV10-54A0A075B6I4 117 aa11.27□□□□□ -0.61
CPSF1-213ENST00000620219 SMIM9A6NGZ8 99 aa11.26□□□□□ -0.61
CPSF1-213ENST00000620219 TIMM17AQ99595 171 aa11.26□□□□□ -0.61
CPSF1-213ENST00000620219 VSIG2Q96IQ7 327 aa11.26□□□□□ -0.61
CPSF1-213ENST00000620219 KIR2DL5BQ8NHK3 375 aa11.26□□□□□ -0.61
CPSF1-213ENST00000620219 HSD52Q0P140 79 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 C19orf73Q9NVV2 129 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 K7ERJ3 54 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 MAPKAPK5-AS1Q8N8E1 139 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 MALP21145 153 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 XCL1P47992 114 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 PRIMA1Q86XR5 153 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 SPANXA1Q9NS26 97 aa11.25□□□□□ -0.61
CPSF1-213ENST00000620219 BOD1L2Q8IYS8 172 aa11.24□□□□□ -0.61
CPSF1-213ENST00000620219 IGLV4-3A0A075B6K6 122 aa11.24□□□□□ -0.61
CPSF1-213ENST00000620219 LOC107984156A0A0G2JMH3 177 aa11.24□□□□□ -0.61
CPSF1-213ENST00000620219 MIFP14174 115 aa11.24□□□□□ -0.61
CPSF1-213ENST00000620219 PSMB2P49721 201 aa11.24□□□□□ -0.61
CPSF1-213ENST00000620219 C5orf38Q86SI9 138 aa11.24□□□□□ -0.61
CPSF1-213ENST00000620219 ARL17AQ8IVW1 177 aa11.24□□□□□ -0.61
CPSF1-213ENST00000620219 CRPP02741 224 aa11.23□□□□□ -0.61
CPSF1-213ENST00000620219 ZMAT4Q9H898 229 aa11.23□□□□□ -0.61
CPSF1-213ENST00000620219 TRAV8-3A0A0A6YYJ7 113 aa11.23□□□□□ -0.61
CPSF1-213ENST00000620219 LYRM9A8MSI8 78 aa11.23□□□□□ -0.61
CPSF1-213ENST00000620219 J3QQQ9 107 aa11.23□□□□□ -0.61
CPSF1-213ENST00000620219 GIG44P09565 113 aaPredicted RBP11.23□□□□□ -0.61
CPSF1-213ENST00000620219 CIRBPQ14011 172 aaKnown RBP11.23□□□□□ -0.61
CPSF1-213ENST00000620219 CLUHP3Q96NS8 147 aa11.23□□□□□ -0.61
CPSF1-213ENST00000620219 TRAV12-1A0A0B4J245 112 aa11.22□□□□□ -0.61
CPSF1-213ENST00000620219 NPSP0C0P6 89 aa11.22□□□□□ -0.61
CPSF1-213ENST00000620219 MRPL23Q16540 153 aaKnown RBP11.22□□□□□ -0.61
CPSF1-213ENST00000620219 C2orf91Q6ZV80 131 aa11.22□□□□□ -0.61
CPSF1-213ENST00000620219 TRBV6-4A0A1B0GX49 114 aa11.22□□□□□ -0.61
CPSF1-213ENST00000620219 MYMXA0A1B0GTQ4 84 aa11.21□□□□□ -0.61
CPSF1-213ENST00000620219 PLEKHB2Q96CS7 222 aa11.21□□□□□ -0.61
CPSF1-213ENST00000620219 IGHV3-30P01768 117 aa11.21□□□□□ -0.61
CPSF1-213ENST00000620219 IGHV3-33P01772 117 aa11.21□□□□□ -0.61
CPSF1-213ENST00000620219 SMIM13P0DJ93 91 aa11.21□□□□□ -0.61
CPSF1-213ENST00000620219 IGHV3-30-3P0DP02 117 aa11.21□□□□□ -0.61
CPSF1-213ENST00000620219 IGHV3-30-5P0DP03 117 aa11.21□□□□□ -0.61
CPSF1-213ENST00000620219 TMEM238LA0A1B0GVL6 79 aa11.21□□□□□ -0.62
CPSF1-213ENST00000620219 A6NJY4 79 aa11.21□□□□□ -0.62
CPSF1-213ENST00000620219 SEC11AP67812 179 aa11.21□□□□□ -0.62
CPSF1-213ENST00000620219 WFDC9Q8NEX5 89 aa11.2□□□□□ -0.62
CPSF1-213ENST00000620219 ICOSQ9Y6W8 199 aa11.2□□□□□ -0.62
CPSF1-213ENST00000620219 IGIPA6NJ69 53 aa11.2□□□□□ -0.62
CPSF1-213ENST00000620219 FXYD2P54710 66 aa11.2□□□□□ -0.62
CPSF1-213ENST00000620219 COX11Q9Y6N1 276 aa11.2□□□□□ -0.62
CPSF1-213ENST00000620219 SS18Q15532 418 aa11.2□□□□□ -0.62
CPSF1-213ENST00000620219 C11orf45Q8TAV5 145 aa11.2□□□□□ -0.62
CPSF1-213ENST00000620219 PRSS47A8MTI9 375 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 C6orf226Q5I0X4 101 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 NDUFA12Q9UI09 145 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 FHL2Q14192 279 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 GAGE10A6NGK3 116 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 DLEU1O43261 78 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 CELA1Q9UNI1 258 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 A8MTW9 85 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 LINC00694P0DN24 101 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 LURAP1LQ8IV03 231 aa11.19□□□□□ -0.62
CPSF1-213ENST00000620219 A0A0J9YWU9 116 aa11.18□□□□□ -0.62
CPSF1-213ENST00000620219 PIK3CD-AS1Q5SR53 167 aa11.18□□□□□ -0.62
CPSF1-213ENST00000620219 A8MZ25 164 aa11.18□□□□□ -0.62
CPSF1-213ENST00000620219 UBE2WQ96B02 151 aa11.18□□□□□ -0.62
CPSF1-213ENST00000620219 X6R8D5 127 aa11.18□□□□□ -0.62
CPSF1-213ENST00000620219 UBE2D3P61077 147 aa11.17□□□□□ -0.62
CPSF1-213ENST00000620219 UBE2D2P62837 147 aa11.17□□□□□ -0.62
CPSF1-213ENST00000620219 RPL32P62910 135 aaKnown RBP11.17□□□□□ -0.62
CPSF1-213ENST00000620219 TRBV6-8A0A0A6YYG3 113 aa11.17□□□□□ -0.62
CPSF1-213ENST00000620219 CFAP161Q6P656 301 aa11.17□□□□□ -0.62
CPSF1-213ENST00000620219 NANOS2P60321 138 aaKnown RBP11.17□□□□□ -0.62
CPSF1-213ENST00000620219 LINC00158P58513 81 aa11.17□□□□□ -0.62
CPSF1-213ENST00000620219 HERVK_113P63121 156 aa11.16□□□□□ -0.62
CPSF1-213ENST00000620219 RNF183Q96D59 192 aa11.16□□□□□ -0.62
CPSF1-213ENST00000620219 CDKN2A-AS1Q9UH64 79 aa11.16□□□□□ -0.62
CPSF1-213ENST00000620219 CSNK1G2-AS1Q8NCQ2 148 aa11.16□□□□□ -0.62
CPSF1-213ENST00000620219 KLK12Q9UKR0 248 aa11.16□□□□□ -0.62
CPSF1-213ENST00000620219 CIDEAO60543 219 aa11.16□□□□□ -0.62
CPSF1-213ENST00000620219 MRPL52Q86TS9 123 aaKnown RBP11.16□□□□□ -0.62
CPSF1-213ENST00000620219 UBE2D4Q9Y2X8 147 aa11.15□□□□□ -0.62
CPSF1-213ENST00000620219 PFN2P35080 140 aa11.15□□□□□ -0.62
CPSF1-213ENST00000620219 Q9HAA7 133 aa11.15□□□□□ -0.62
CPSF1-213ENST00000620219 DEFB131BA0A096LNP1 70 aa11.15□□□□□ -0.62
CPSF1-213ENST00000620219 KRTAP10-11P60412 298 aa11.15□□□□□ -0.62
CPSF1-213ENST00000620219 E9PLD3 99 aa11.15□□□□□ -0.63
CPSF1-213ENST00000620219 RNF151Q2KHN1 245 aa11.15□□□□□ -0.63
CPSF1-213ENST00000620219 OVOL2Q9BRP0 275 aa11.15□□□□□ -0.63
CPSF1-213ENST00000620219 CHCHD7Q9BUK0 85 aa11.15□□□□□ -0.63
CPSF1-213ENST00000620219 FABP2P12104 132 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 IGLL5B9A064 214 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 CRYBA4P53673 196 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 CKS1BP61024 79 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 UBE2DNLQ8IWF7 75 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 LINC01546A6NGU7 62 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 Q6ZTC4 211 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 DAND5Q8N907 189 aa11.14□□□□□ -0.63
CPSF1-213ENST00000620219 TAX1BP3O14907 124 aa11.13□□□□□ -0.63
CPSF1-213ENST00000620219 GTSF1LQ9H1H1 148 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms