RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 CCDC168Q8NDH2 2452 aa12.4□□□□□ -0.42
NEK3-206ENST00000611833 LITAFQ99732 161 aa12.4□□□□□ -0.42
NEK3-206ENST00000611833 KRTAP1-1Q07627 177 aa12.39□□□□□ -0.43
NEK3-206ENST00000611833 ADAMTSL4-AS1Q5T5F5 129 aa12.38□□□□□ -0.43
NEK3-206ENST00000611833 SMAGPQ0VAQ4 97 aa12.38□□□□□ -0.43
NEK3-206ENST00000611833 TEN1Q86WV5 123 aa12.38□□□□□ -0.43
NEK3-206ENST00000611833 IL17DQ8TAD2 202 aa12.38□□□□□ -0.43
NEK3-206ENST00000611833 CDKN2A-AS1Q9UH64 79 aa12.38□□□□□ -0.43
NEK3-206ENST00000611833 RPL36AP83881 106 aaKnown RBP12.37□□□□□ -0.43
NEK3-206ENST00000611833 Q6ZTI0 123 aa12.37□□□□□ -0.43
NEK3-206ENST00000611833 RPL36ALQ969Q0 106 aaKnown RBP12.37□□□□□ -0.43
NEK3-206ENST00000611833 SPANXDQ9BXN6 97 aa12.37□□□□□ -0.43
NEK3-206ENST00000611833 SPANXCQ9NY87 97 aa12.37□□□□□ -0.43
NEK3-206ENST00000611833 PDZD2O15018 2839 aa12.37□□□□□ -0.43
NEK3-206ENST00000611833 TIRAPP58753 221 aa12.37□□□□□ -0.43
NEK3-206ENST00000611833 LINC01006Q8NI28 216 aa12.37□□□□□ -0.43
NEK3-206ENST00000611833 ZFAND6Q6FIF0 208 aa12.36□□□□□ -0.43
NEK3-206ENST00000611833 SBSPONQ8IVN8 264 aa12.36□□□□□ -0.43
NEK3-206ENST00000611833 PPDPFLQ8WWR9 84 aa12.36□□□□□ -0.43
NEK3-206ENST00000611833 K7EQD1 137 aa12.36□□□□□ -0.43
NEK3-206ENST00000611833 NPC2P61916 151 aa12.36□□□□□ -0.43
NEK3-206ENST00000611833 MIAQ16674 131 aa12.36□□□□□ -0.43
NEK3-206ENST00000611833 TRBV10-1A0A0K0K1A3 114 aa12.34□□□□□ -0.43
NEK3-206ENST00000611833 C9JAW5 83 aa12.34□□□□□ -0.43
NEK3-206ENST00000611833 NOP10Q9NPE3 64 aaKnown RBP12.34□□□□□ -0.43
NEK3-206ENST00000611833 YAE1D1Q9NRH1 226 aa12.34□□□□□ -0.43
NEK3-206ENST00000611833 NIPBLQ6KC79 2804 aaeCLIP12.34□□□□□ -0.43
NEK3-206ENST00000611833 IGLV5-45A0A087WSX0 123 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 TRAV4A0A0B4J268 109 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 SLC25A20O43772 301 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 LINC00694P0DN24 101 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 COX6A2Q02221 97 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 DAZ2Q13117 558 aaKnown RBP12.33□□□□□ -0.44
NEK3-206ENST00000611833 DAZ4Q86SG3 579 aaKnown RBP12.33□□□□□ -0.44
NEK3-206ENST00000611833 TMEM101Q96IK0 257 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 CARD19Q96LW7 228 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 DAZ3Q9NR90 486 aaKnown RBP12.33□□□□□ -0.44
NEK3-206ENST00000611833 CMC4P56277 68 aaPredicted RBP12.33□□□□□ -0.44
NEK3-206ENST00000611833 HERVK_113P63121 156 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 ANKRD29Q8N6D5 301 aa12.33□□□□□ -0.44
NEK3-206ENST00000611833 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.33□□□□□ -0.44
NEK3-206ENST00000611833 GAGE12JA6NER3 117 aa12.32□□□□□ -0.44
NEK3-206ENST00000611833 RNASE1P07998 156 aaKnown RBP12.32□□□□□ -0.44
NEK3-206ENST00000611833 SCGB1A1P11684 91 aa12.32□□□□□ -0.44
NEK3-206ENST00000611833 GAGE4Q13068 117 aa12.32□□□□□ -0.44
NEK3-206ENST00000611833 GAGE5Q13069 117 aa12.32□□□□□ -0.44
NEK3-206ENST00000611833 ATXN8Q156A1 80 aa12.32□□□□□ -0.44
NEK3-206ENST00000611833 ANK3Q12955 4377 aaKnown RBP12.32□□□□□ -0.44
NEK3-206ENST00000611833 C16orf95Q9H693 158 aa12.32□□□□□ -0.44
NEK3-206ENST00000611833 TRBV30A0A0K0K1B3 111 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 NDUFA1O15239 70 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 TIMM17BO60830 172 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 LINC00242Q5T6M2 205 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 TRIAP1O43715 76 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 ACANP16112 2415 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 NTM-AS1Q6ZSK4 140 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 WFDC10AQ9H1F0 79 aa12.31□□□□□ -0.44
NEK3-206ENST00000611833 SETD2Q9BYW2 2564 aaPredicted RBP12.3□□□□□ -0.44
NEK3-206ENST00000611833 TRAV13-1A0A0B4J241 112 aa12.3□□□□□ -0.44
NEK3-206ENST00000611833 NDUFA7O95182 113 aa12.3□□□□□ -0.44
NEK3-206ENST00000611833 GIG44P09565 113 aaPredicted RBP12.3□□□□□ -0.44
NEK3-206ENST00000611833 RPL35AP18077 110 aaKnown RBP12.3□□□□□ -0.44
NEK3-206ENST00000611833 CIRBPQ14011 172 aaKnown RBP12.3□□□□□ -0.44
NEK3-206ENST00000611833 DAND5Q8N907 189 aa12.29□□□□□ -0.44
NEK3-206ENST00000611833 SETXQ7Z333 2677 aaKnown RBP12.29□□□□□ -0.44
NEK3-206ENST00000611833 IFITM1P13164 125 aa12.29□□□□□ -0.44
NEK3-206ENST00000611833 CSDC2Q9Y534 153 aaKnown RBP12.29□□□□□ -0.44
NEK3-206ENST00000611833 ICOSQ9Y6W8 199 aa12.29□□□□□ -0.44
NEK3-206ENST00000611833 TRGV2A0A075B6R0 118 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 C16orf74Q96GX8 76 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 GAGE7O76087 117 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 GAGE12FP0CL80 117 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 GAGE12GP0CL81 117 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 GAGE12IP0CL82 117 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 LINC01620Q4KN68 170 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 CDIP1Q9H305 208 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 Q9H8V8 135 aa12.28□□□□□ -0.44
NEK3-206ENST00000611833 M0QXV9 152 aa12.27□□□□□ -0.44
NEK3-206ENST00000611833 UBE2L6O14933 153 aa12.27□□□□□ -0.44
NEK3-206ENST00000611833 RNF183Q96D59 192 aa12.27□□□□□ -0.44
NEK3-206ENST00000611833 IGLV5-39A0A0G2JS06 123 aa12.27□□□□□ -0.45
NEK3-206ENST00000611833 IGLV1-51P01701 117 aa12.27□□□□□ -0.45
NEK3-206ENST00000611833 COX6CP09669 75 aa12.27□□□□□ -0.45
NEK3-206ENST00000611833 FAM19A3Q7Z5A8 133 aa12.26□□□□□ -0.45
NEK3-206ENST00000611833 ZNF625Q96I27 306 aaPredicted RBP12.26□□□□□ -0.45
NEK3-206ENST00000611833 CDC42SE2Q9NRR3 84 aa12.26□□□□□ -0.45
NEK3-206ENST00000611833 C19orf73Q9NVV2 129 aa12.26□□□□□ -0.45
NEK3-206ENST00000611833 ITPR2Q14571 2701 aa12.26□□□□□ -0.45
NEK3-206ENST00000611833 MTORP42345 2549 aa12.25□□□□□ -0.45
NEK3-206ENST00000611833 PLAC8L1A1L4L8 177 aa12.25□□□□□ -0.45
NEK3-206ENST00000611833 SMIM1B2RUZ4 78 aa12.25□□□□□ -0.45
NEK3-206ENST00000611833 TMEM243Q9BU79 118 aa12.25□□□□□ -0.45
NEK3-206ENST00000611833 JMJD1CQ15652 2540 aa12.25□□□□□ -0.45
NEK3-206ENST00000611833 A0A0U1RRA0 63 aa12.25□□□□□ -0.45
NEK3-206ENST00000611833 RPL13AP40429 203 aaKnown RBP12.24□□□□□ -0.45
NEK3-206ENST00000611833 FAM110AQ9BQ89 295 aa12.24□□□□□ -0.45
NEK3-206ENST00000611833 TRGV4A0A0C4DH28 118 aa12.23□□□□□ -0.45
NEK3-206ENST00000611833 TRBV10-2A0A0K0K1G8 114 aa12.23□□□□□ -0.45
NEK3-206ENST00000611833 PLA2G2AP14555 144 aa12.23□□□□□ -0.45
NEK3-206ENST00000611833 NOTCH3Q9UM47 2321 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms