RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 TMEM101Q96IK0 257 aa13.18□□□□□ -0.3
SSBP4-210ENST00000601444 NDUFA5Q16718 116 aa13.17□□□□□ -0.3
SSBP4-210ENST00000601444 SVBPQ8N300 66 aa13.17□□□□□ -0.3
SSBP4-210ENST00000601444 CDC42SE2Q9NRR3 84 aa13.17□□□□□ -0.3
SSBP4-210ENST00000601444 UBE2D4Q9Y2X8 147 aa13.17□□□□□ -0.3
SSBP4-210ENST00000601444 PRSS47A8MTI9 375 aa13.16□□□□□ -0.3
SSBP4-210ENST00000601444 SNAPINO95295 136 aa13.16□□□□□ -0.3
SSBP4-210ENST00000601444 RPL39P62891 51 aaKnown RBP13.16□□□□□ -0.3
SSBP4-210ENST00000601444 NTN5Q8WTR8 489 aaPredicted RBP13.16□□□□□ -0.3
SSBP4-210ENST00000601444 LAMTOR2Q9Y2Q5 125 aa13.16□□□□□ -0.3
SSBP4-210ENST00000601444 APOBP04114 4563 aaKnown RBP13.16□□□□□ -0.3
SSBP4-210ENST00000601444 HERC2O95714 4834 aa13.15□□□□□ -0.3
SSBP4-210ENST00000601444 USP17L23D6RBM5 183 aa13.15□□□□□ -0.3
SSBP4-210ENST00000601444 GCSHP23434 173 aa13.15□□□□□ -0.3
SSBP4-210ENST00000601444 ZNF664Q8N3J9 261 aa13.15□□□□□ -0.3
SSBP4-210ENST00000601444 GNB1LQ9BYB4 327 aa13.15□□□□□ -0.3
SSBP4-210ENST00000601444 MAP1LC3AQ9H492 121 aa13.15□□□□□ -0.3
SSBP4-210ENST00000601444 TGIF2-C20orf24A0A0A6YYL0 155 aa13.14□□□□□ -0.31
SSBP4-210ENST00000601444 RNASE13Q5GAN3 156 aaKnown RBP13.14□□□□□ -0.31
SSBP4-210ENST00000601444 GAGE12HA6NDE8 117 aa13.13□□□□□ -0.31
SSBP4-210ENST00000601444 DGAT2L7PQ6IED9 249 aa13.13□□□□□ -0.31
SSBP4-210ENST00000601444 CHCHD10Q8WYQ3 142 aaPredicted RBP13.13□□□□□ -0.31
SSBP4-210ENST00000601444 LINC00959A0A1B0GUT2 108 aa13.12□□□□□ -0.31
SSBP4-210ENST00000601444 RAB5AP20339 215 aa13.12□□□□□ -0.31
SSBP4-210ENST00000601444 CSDC2Q9Y534 153 aaKnown RBP13.12□□□□□ -0.31
SSBP4-210ENST00000601444 RYR1P21817 5038 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 HSPG2P98160 4391 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 PRSS1P07477 247 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 LINC01620Q4KN68 170 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 Q6ZUT4 128 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 Q8N8P6 123 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 FAM104AQ969W3 186 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 TMEM18Q96B42 140 aa13.11□□□□□ -0.31
SSBP4-210ENST00000601444 OPRPNQ99935 248 aaPredicted RBP13.11□□□□□ -0.31
SSBP4-210ENST00000601444 CDK2AP2O75956 126 aa13.1□□□□□ -0.31
SSBP4-210ENST00000601444 TIMM21Q9BVV7 248 aa13.1□□□□□ -0.31
SSBP4-210ENST00000601444 IFI27P40305 119 aaPredicted RBP13.09□□□□□ -0.31
SSBP4-210ENST00000601444 XCL1P47992 114 aa13.09□□□□□ -0.31
SSBP4-210ENST00000601444 KRTAP17-1Q9BYP8 105 aa13.09□□□□□ -0.31
SSBP4-210ENST00000601444 MRPL18Q9H0U6 180 aaKnown RBP13.09□□□□□ -0.31
SSBP4-210ENST00000601444 CCL25O15444 150 aa13.08□□□□□ -0.32
SSBP4-210ENST00000601444 SMAGPQ0VAQ4 97 aa13.08□□□□□ -0.32
SSBP4-210ENST00000601444 FOXI1Q12951 378 aa13.08□□□□□ -0.32
SSBP4-210ENST00000601444 COX19Q49B96 90 aa13.08□□□□□ -0.32
SSBP4-210ENST00000601444 C14orf177Q52M58 125 aa13.08□□□□□ -0.32
SSBP4-210ENST00000601444 ALKBH7Q9BT30 221 aaPredicted RBP13.08□□□□□ -0.32
SSBP4-210ENST00000601444 FABP9Q0Z7S8 132 aa13.07□□□□□ -0.32
SSBP4-210ENST00000601444 MT-ND6P03923 174 aa13.06□□□□□ -0.32
SSBP4-210ENST00000601444 XGP55808 180 aa13.06□□□□□ -0.32
SSBP4-210ENST00000601444 SS18Q15532 418 aa13.06□□□□□ -0.32
SSBP4-210ENST00000601444 YPEL4Q96NS1 127 aa13.06□□□□□ -0.32
SSBP4-210ENST00000601444 SPANXA1Q9NS26 97 aa13.06□□□□□ -0.32
SSBP4-210ENST00000601444 FAM30AQ9NZY2 134 aa13.06□□□□□ -0.32
SSBP4-210ENST00000601444 DNAH8Q96JB1 4490 aa13.05□□□□□ -0.32
SSBP4-210ENST00000601444 TRAV13-1A0A0B4J241 112 aa13.05□□□□□ -0.32
SSBP4-210ENST00000601444 C15orf56Q8N910 161 aa13.05□□□□□ -0.32
SSBP4-210ENST00000601444 NXT2Q9NPJ8 142 aaKnown RBP13.05□□□□□ -0.32
SSBP4-210ENST00000601444 HAMPP81172 84 aa13.04□□□□□ -0.32
SSBP4-210ENST00000601444 hDV102S1A0JD36 115 aa13.03□□□□□ -0.32
SSBP4-210ENST00000601444 C2orf66Q6UXQ4 117 aa13.03□□□□□ -0.32
SSBP4-210ENST00000601444 TRAPPC1Q9Y5R8 145 aa13.03□□□□□ -0.32
SSBP4-210ENST00000601444 SLPIP03973 132 aa13.02□□□□□ -0.33
SSBP4-210ENST00000601444 MRPS36P82909 103 aaKnown RBP13.02□□□□□ -0.33
SSBP4-210ENST00000601444 ORMDL2Q53FV1 153 aa13.02□□□□□ -0.33
SSBP4-210ENST00000601444 CD164L2Q6UWJ8 174 aa13.02□□□□□ -0.33
SSBP4-210ENST00000601444 CBLN2Q8IUK8 224 aa13.02□□□□□ -0.33
SSBP4-210ENST00000601444 PRSS3P2Q8NHM4 247 aa13.02□□□□□ -0.33
SSBP4-210ENST00000601444 IGLV4-3A0A075B6K6 122 aa13.01□□□□□ -0.33
SSBP4-210ENST00000601444 C1orf196B1AJZ1 125 aa13.01□□□□□ -0.33
SSBP4-210ENST00000601444 HIGD2BQ4VC39 106 aa13.01□□□□□ -0.33
SSBP4-210ENST00000601444 CYSLTR1Q9Y271 337 aa13.01□□□□□ -0.33
SSBP4-210ENST00000601444 PYGO1Q9Y3Y4 419 aa13.01□□□□□ -0.33
SSBP4-210ENST00000601444 K7EMI3 77 aa13□□□□□ -0.33
SSBP4-210ENST00000601444 ZC2HC1BQ5TFG8 222 aa12.99□□□□□ -0.33
SSBP4-210ENST00000601444 CFAP161Q6P656 301 aa12.99□□□□□ -0.33
SSBP4-210ENST00000601444 SMCO4Q9NRQ5 59 aa12.98□□□□□ -0.33
SSBP4-210ENST00000601444 LINC01546A6NGU7 62 aa12.97□□□□□ -0.33
SSBP4-210ENST00000601444 IGIPA6NJ69 53 aa12.97□□□□□ -0.33
SSBP4-210ENST00000601444 IFITM10A6NMD0 228 aa12.97□□□□□ -0.33
SSBP4-210ENST00000601444 C9orf163Q8N9P6 203 aa12.97□□□□□ -0.33
SSBP4-210ENST00000601444 KRTAP4-5Q9BYR2 181 aa12.97□□□□□ -0.33
SSBP4-210ENST00000601444 CNBPP62633 177 aaKnown RBP12.96□□□□□ -0.33
SSBP4-210ENST00000601444 Q6ZSA8 131 aa12.96□□□□□ -0.33
SSBP4-210ENST00000601444 C5orf38Q86SI9 138 aa12.96□□□□□ -0.33
SSBP4-210ENST00000601444 LINC00526Q96FQ7 95 aa12.96□□□□□ -0.33
SSBP4-210ENST00000601444 TMEM141Q96I45 108 aa12.96□□□□□ -0.33
SSBP4-210ENST00000601444 AP5S1Q9NUS5 200 aa12.96□□□□□ -0.33
SSBP4-210ENST00000601444 GVQW2A0A096LPI5 108 aaPredicted RBP12.95□□□□□ -0.34
SSBP4-210ENST00000601444 C18orf32Q8TCD1 76 aa12.95□□□□□ -0.34
SSBP4-210ENST00000601444 TOMM6Q96B49 74 aa12.95□□□□□ -0.34
SSBP4-210ENST00000601444 IGHV1-58A0A0C4DH39 117 aa12.94□□□□□ -0.34
SSBP4-210ENST00000601444 COX7A2LO14548 114 aa12.94□□□□□ -0.34
SSBP4-210ENST00000601444 LINC00173Q6ZV60 143 aa12.94□□□□□ -0.34
SSBP4-210ENST00000601444 URB1-AS1Q96HZ7 61 aa12.94□□□□□ -0.34
SSBP4-210ENST00000601444 SMR3BP02814 79 aaPredicted RBP12.93□□□□□ -0.34
SSBP4-210ENST00000601444 FA2HQ7L5A8 372 aa12.93□□□□□ -0.34
SSBP4-210ENST00000601444 MALP21145 153 aa12.92□□□□□ -0.34
SSBP4-210ENST00000601444 COX6A2Q02221 97 aa12.92□□□□□ -0.34
SSBP4-210ENST00000601444 TEX43Q6ZNM6 134 aa12.92□□□□□ -0.34
SSBP4-210ENST00000601444 Q8N1X5 172 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms