RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 GAGE7O76087 117 aa14.02□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE12FP0CL80 117 aa14.02□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE12GP0CL81 117 aa14.02□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE12IP0CL82 117 aa14.02□□□□□ -0.17
CLIP3-206ENST00000593074 IGHV3-64A0A075B6Q5 118 aa14□□□□□ -0.17
CLIP3-206ENST00000593074 UBE2D1P51668 147 aa14□□□□□ -0.17
CLIP3-206ENST00000593074 IGHV3-30P01768 117 aa14□□□□□ -0.17
CLIP3-206ENST00000593074 IGHV3-30-3P0DP02 117 aa14□□□□□ -0.17
CLIP3-206ENST00000593074 IGHV3-30-5P0DP03 117 aa14□□□□□ -0.17
CLIP3-206ENST00000593074 NTM-AS1Q6ZSK4 140 aa14□□□□□ -0.17
CLIP3-206ENST00000593074 TRBV6-4A0A1B0GX49 114 aa13.99□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE12JA6NER3 117 aa13.99□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE4Q13068 117 aa13.99□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE5Q13069 117 aa13.99□□□□□ -0.17
CLIP3-206ENST00000593074 GAGE13Q4V321 117 aa13.99□□□□□ -0.17
CLIP3-206ENST00000593074 SBSPONQ8IVN8 264 aa13.99□□□□□ -0.17
CLIP3-206ENST00000593074 CSDC2Q9Y534 153 aaKnown RBP13.99□□□□□ -0.17
CLIP3-206ENST00000593074 NOTCH3Q9UM47 2321 aa13.98□□□□□ -0.17
CLIP3-206ENST00000593074 IGHV1-58A0A0C4DH39 117 aa13.97□□□□□ -0.17
CLIP3-206ENST00000593074 LINC00694P0DN24 101 aa13.97□□□□□ -0.17
CLIP3-206ENST00000593074 GTSF1LQ9H1H1 148 aa13.97□□□□□ -0.17
CLIP3-206ENST00000593074 DGAT2L7PQ6IED9 249 aa13.97□□□□□ -0.17
CLIP3-206ENST00000593074 C10orf126Q8N4M7 172 aa13.97□□□□□ -0.17
CLIP3-206ENST00000593074 IGLV5-45A0A087WSX0 123 aa13.96□□□□□ -0.17
CLIP3-206ENST00000593074 VSIG2Q96IQ7 327 aa13.96□□□□□ -0.17
CLIP3-206ENST00000593074 TRAV8-3A0A0A6YYJ7 113 aa13.95□□□□□ -0.18
CLIP3-206ENST00000593074 TIRAPP58753 221 aa13.95□□□□□ -0.18
CLIP3-206ENST00000593074 GEMIN7Q9H840 131 aaKnown RBP13.95□□□□□ -0.18
CLIP3-206ENST00000593074 TRGV4A0A0C4DH28 118 aa13.94□□□□□ -0.18
CLIP3-206ENST00000593074 FAM19A3Q7Z5A8 133 aa13.94□□□□□ -0.18
CLIP3-206ENST00000593074 WFDC9Q8NEX5 89 aa13.94□□□□□ -0.18
CLIP3-206ENST00000593074 KIR2DL5BQ8NHK3 375 aa13.94□□□□□ -0.18
CLIP3-206ENST00000593074 A0A0J9YXY3 114 aa13.93□□□□□ -0.18
CLIP3-206ENST00000593074 LOC100131303A0A0U1RQF7 123 aa13.93□□□□□ -0.18
CLIP3-206ENST00000593074 SMAGPQ0VAQ4 97 aa13.93□□□□□ -0.18
CLIP3-206ENST00000593074 FHL2Q14192 279 aa13.93□□□□□ -0.18
CLIP3-206ENST00000593074 LINC00612Q8N6U2 182 aa13.93□□□□□ -0.18
CLIP3-206ENST00000593074 PGPEP1Q9NXJ5 209 aa13.93□□□□□ -0.18
CLIP3-206ENST00000593074 VWFP04275 2813 aa13.93□□□□□ -0.18
CLIP3-206ENST00000593074 TMEM238C9JI98 176 aa13.92□□□□□ -0.18
CLIP3-206ENST00000593074 SPINK8P0C7L1 97 aa13.92□□□□□ -0.18
CLIP3-206ENST00000593074 CDKN2A-AS1Q9UH64 79 aa13.92□□□□□ -0.18
CLIP3-206ENST00000593074 TMEM243Q9BU79 118 aa13.91□□□□□ -0.18
CLIP3-206ENST00000593074 F8P00451 2351 aa13.91□□□□□ -0.18
CLIP3-206ENST00000593074 HERVK_113P63121 156 aa13.91□□□□□ -0.18
CLIP3-206ENST00000593074 OCIAD2Q56VL3 154 aa13.91□□□□□ -0.18
CLIP3-206ENST00000593074 NDUFA12Q9UI09 145 aa13.91□□□□□ -0.18
CLIP3-206ENST00000593074 X6R8D5 127 aa13.91□□□□□ -0.18
CLIP3-206ENST00000593074 FLNBO75369 2602 aaKnown RBP13.9□□□□□ -0.18
CLIP3-206ENST00000593074 LINC00242Q5T6M2 205 aa13.9□□□□□ -0.18
CLIP3-206ENST00000593074 ZFAND6Q6FIF0 208 aa13.9□□□□□ -0.18
CLIP3-206ENST00000593074 LITAFQ99732 161 aa13.9□□□□□ -0.18
CLIP3-206ENST00000593074 CDC42SE2Q9NRR3 84 aa13.9□□□□□ -0.18
CLIP3-206ENST00000593074 SMIM9A6NGZ8 99 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 H7C423 109 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 CFC1BP0CG36 223 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 CFC1P0CG37 223 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 TENM1Q9UKZ4 2725 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 APOMO95445 188 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 TSPAN13O95857 204 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 COX6A2Q02221 97 aa13.89□□□□□ -0.19
CLIP3-206ENST00000593074 UBE2L6O14933 153 aa13.87□□□□□ -0.19
CLIP3-206ENST00000593074 ATRQ13535 2644 aa13.87□□□□□ -0.19
CLIP3-206ENST00000593074 TEP1Q99973 2627 aaKnown RBP13.87□□□□□ -0.19
CLIP3-206ENST00000593074 A8MZ25 164 aa13.87□□□□□ -0.19
CLIP3-206ENST00000593074 RBX1P62877 108 aa13.87□□□□□ -0.19
CLIP3-206ENST00000593074 RPL24P83731 157 aaKnown RBP13.87□□□□□ -0.19
CLIP3-206ENST00000593074 IGLV5-39A0A0G2JS06 123 aa13.86□□□□□ -0.19
CLIP3-206ENST00000593074 APOC4P55056 127 aa13.86□□□□□ -0.19
CLIP3-206ENST00000593074 TMEM101Q96IK0 257 aa13.86□□□□□ -0.19
CLIP3-206ENST00000593074 A4D1N5 150 aa13.86□□□□□ -0.19
CLIP3-206ENST00000593074 WIPF1O43516 503 aa13.86□□□□□ -0.19
CLIP3-206ENST00000593074 DEFB130BP0DP73 79 aa13.86□□□□□ -0.19
CLIP3-206ENST00000593074 DEFB130AP0DP74 79 aa13.86□□□□□ -0.19
CLIP3-206ENST00000593074 MUSTN1Q8IVN3 82 aa13.85□□□□□ -0.19
CLIP3-206ENST00000593074 SPANXDQ9BXN6 97 aa13.85□□□□□ -0.19
CLIP3-206ENST00000593074 SPANXCQ9NY87 97 aa13.85□□□□□ -0.19
CLIP3-206ENST00000593074 TRBV6-8A0A0A6YYG3 113 aa13.84□□□□□ -0.19
CLIP3-206ENST00000593074 TRAV13-1A0A0B4J241 112 aa13.84□□□□□ -0.19
CLIP3-206ENST00000593074 NDUFA1O15239 70 aa13.84□□□□□ -0.19
CLIP3-206ENST00000593074 PRO1854Q9UHT4 67 aa13.84□□□□□ -0.19
CLIP3-206ENST00000593074 A0A0B4J2C4 111 aa13.83□□□□□ -0.2
CLIP3-206ENST00000593074 H3BMG7 143 aa13.83□□□□□ -0.2
CLIP3-206ENST00000593074 KRTAP24-1Q3LI83 254 aa13.83□□□□□ -0.2
CLIP3-206ENST00000593074 EIF4EBP3O60516 100 aaPredicted RBP13.83□□□□□ -0.2
CLIP3-206ENST00000593074 SMIM1B2RUZ4 78 aa13.82□□□□□ -0.2
CLIP3-206ENST00000593074 K7ERU9 68 aa13.82□□□□□ -0.2
CLIP3-206ENST00000593074 TIMM17BO60830 172 aa13.82□□□□□ -0.2
CLIP3-206ENST00000593074 F8W1H4 67 aa13.81□□□□□ -0.2
CLIP3-206ENST00000593074 MIAQ16674 131 aa13.81□□□□□ -0.2
CLIP3-206ENST00000593074 DEFB135Q30KP9 77 aa13.81□□□□□ -0.2
CLIP3-206ENST00000593074 ADAMTSL4-AS1Q5T5F5 129 aa13.81□□□□□ -0.2
CLIP3-206ENST00000593074 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.81□□□□□ -0.2
CLIP3-206ENST00000593074 F5H768 121 aa13.81□□□□□ -0.2
CLIP3-206ENST00000593074 LYRM9A8MSI8 78 aa13.8□□□□□ -0.2
CLIP3-206ENST00000593074 LYRM7Q5U5X0 104 aa13.79□□□□□ -0.2
CLIP3-206ENST00000593074 GAGE6Q13070 117 aa13.79□□□□□ -0.2
CLIP3-206ENST00000593074 FAM222AQ5U5X8 452 aa13.79□□□□□ -0.2
CLIP3-206ENST00000593074 PRO0461Q9UI25 63 aa13.78□□□□□ -0.2
CLIP3-206ENST00000593074 LOC107984156A0A0G2JMH3 177 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms