RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 C9orf163Q8N9P6 203 aa15.46■□□□□ 0.07
SHMT1-206ENST00000579558 C20orf78Q9BR46 151 aa15.45■□□□□ 0.06
SHMT1-206ENST00000579558 AP5S1Q9NUS5 200 aa15.45■□□□□ 0.06
SHMT1-206ENST00000579558 CFAP161Q6P656 301 aa15.44■□□□□ 0.06
SHMT1-206ENST00000579558 ATP5L2Q7Z4Y8 100 aa15.44■□□□□ 0.06
SHMT1-206ENST00000579558 VPS13BQ7Z7G8 4022 aa15.43■□□□□ 0.06
SHMT1-206ENST00000579558 TRBV24-1A0A075B6N3 115 aa15.43■□□□□ 0.06
SHMT1-206ENST00000579558 D6R8Y8 96 aa15.43■□□□□ 0.06
SHMT1-206ENST00000579558 TNFRSF6BO95407 300 aa15.43■□□□□ 0.06
SHMT1-206ENST00000579558 MT-ND4LP03901 98 aa15.43■□□□□ 0.06
SHMT1-206ENST00000579558 CNBPP62633 177 aaKnown RBP15.43■□□□□ 0.06
SHMT1-206ENST00000579558 LINC00528Q8N1L1 170 aa15.43■□□□□ 0.06
SHMT1-206ENST00000579558 CDC42SE2Q9NRR3 84 aa15.43■□□□□ 0.06
SHMT1-206ENST00000579558 HERC1Q15751 4861 aa15.42■□□□□ 0.06
SHMT1-206ENST00000579558 LINC00959A0A1B0GUT2 108 aa15.42■□□□□ 0.06
SHMT1-206ENST00000579558 C15orf56Q8N910 161 aa15.42■□□□□ 0.06
SHMT1-206ENST00000579558 CIRBP-AS1Q8TBR5 109 aa15.42■□□□□ 0.06
SHMT1-206ENST00000579558 ANAPC16Q96DE5 110 aa15.42■□□□□ 0.06
SHMT1-206ENST00000579558 RPL32P62910 135 aaKnown RBP15.41■□□□□ 0.06
SHMT1-206ENST00000579558 IFITM2Q01629 132 aa15.41■□□□□ 0.06
SHMT1-206ENST00000579558 SMAGPQ0VAQ4 97 aa15.41■□□□□ 0.06
SHMT1-206ENST00000579558 ZNF664Q8N3J9 261 aa15.41■□□□□ 0.06
SHMT1-206ENST00000579558 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.4■□□□□ 0.06
SHMT1-206ENST00000579558 XCL1P47992 114 aa15.4■□□□□ 0.06
SHMT1-206ENST00000579558 FOXI1Q12951 378 aa15.4■□□□□ 0.06
SHMT1-206ENST00000579558 CCL25O15444 150 aa15.39■□□□□ 0.05
SHMT1-206ENST00000579558 NPYP01303 97 aa15.39■□□□□ 0.05
SHMT1-206ENST00000579558 PPBPP02775 128 aa15.39■□□□□ 0.05
SHMT1-206ENST00000579558 SS18Q15532 418 aa15.39■□□□□ 0.05
SHMT1-206ENST00000579558 SMIM2Q9BVW6 85 aa15.39■□□□□ 0.05
SHMT1-206ENST00000579558 UBE2D4Q9Y2X8 147 aa15.39■□□□□ 0.05
SHMT1-206ENST00000579558 TCAPO15273 167 aa15.38■□□□□ 0.05
SHMT1-206ENST00000579558 SLPIP03973 132 aa15.38■□□□□ 0.05
SHMT1-206ENST00000579558 PLA2G1BP04054 148 aaKnown RBP15.38■□□□□ 0.05
SHMT1-206ENST00000579558 HIGD2BQ4VC39 106 aa15.38■□□□□ 0.05
SHMT1-206ENST00000579558 SDIM1Q6ZPB5 146 aa15.38■□□□□ 0.05
SHMT1-206ENST00000579558 TMEM18Q96B42 140 aa15.38■□□□□ 0.05
SHMT1-206ENST00000579558 PHOX2AO14813 284 aa15.37■□□□□ 0.05
SHMT1-206ENST00000579558 ORMDL3Q8N138 153 aa15.37■□□□□ 0.05
SHMT1-206ENST00000579558 CSDC2Q9Y534 153 aaKnown RBP15.37■□□□□ 0.05
SHMT1-206ENST00000579558 IGHV3-64A0A075B6Q5 118 aa15.36■□□□□ 0.05
SHMT1-206ENST00000579558 UQCC3Q6UW78 93 aa15.36■□□□□ 0.05
SHMT1-206ENST00000579558 SRRM2Q9UQ35 2752 aaKnown RBP15.36■□□□□ 0.05
SHMT1-206ENST00000579558 TMEM136Q6ZRR5 245 aa15.35■□□□□ 0.05
SHMT1-206ENST00000579558 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.35■□□□□ 0.05
SHMT1-206ENST00000579558 RNASE13Q5GAN3 156 aaKnown RBP15.34■□□□□ 0.05
SHMT1-206ENST00000579558 PRELID3AQ96N28 172 aa15.34■□□□□ 0.05
SHMT1-206ENST00000579558 TIMM21Q9BVV7 248 aa15.34■□□□□ 0.05
SHMT1-206ENST00000579558 GVQW2A0A096LPI5 108 aaPredicted RBP15.33■□□□□ 0.04
SHMT1-206ENST00000579558 CD164L2Q6UWJ8 174 aa15.33■□□□□ 0.04
SHMT1-206ENST00000579558 Q6ZUT4 128 aa15.33■□□□□ 0.04
SHMT1-206ENST00000579558 TMEM218A2RU14 115 aa15.32■□□□□ 0.04
SHMT1-206ENST00000579558 PANO1I0J062 215 aa15.32■□□□□ 0.04
SHMT1-206ENST00000579558 ADCYAP1P18509 176 aa15.32■□□□□ 0.04
SHMT1-206ENST00000579558 RPL39P62891 51 aaKnown RBP15.32■□□□□ 0.04
SHMT1-206ENST00000579558 IGHV1-58A0A0C4DH39 117 aa15.31■□□□□ 0.04
SHMT1-206ENST00000579558 C1orf196B1AJZ1 125 aa15.3■□□□□ 0.04
SHMT1-206ENST00000579558 TRAV13-1A0A0B4J241 112 aa15.29■□□□□ 0.04
SHMT1-206ENST00000579558 RAB5AP20339 215 aa15.28■□□□□ 0.04
SHMT1-206ENST00000579558 SPANXA1Q9NS26 97 aa15.28■□□□□ 0.04
SHMT1-206ENST00000579558 LAMTOR2Q9Y2Q5 125 aa15.28■□□□□ 0.04
SHMT1-206ENST00000579558 FLG2Q5D862 2391 aaPredicted RBP15.27■□□□□ 0.04
SHMT1-206ENST00000579558 CIRBPQ14011 172 aaKnown RBP15.27■□□□□ 0.04
SHMT1-206ENST00000579558 IMMP2LQ96T52 175 aa15.27■□□□□ 0.04
SHMT1-206ENST00000579558 CHTF8P0CG12 524 aa15.26■□□□□ 0.03
SHMT1-206ENST00000579558 COMMD7Q86VX2 200 aa15.26■□□□□ 0.03
SHMT1-206ENST00000579558 DPH3Q96FX2 82 aa15.26■□□□□ 0.03
SHMT1-206ENST00000579558 MAP1LC3AQ9H492 121 aa15.26■□□□□ 0.03
SHMT1-206ENST00000579558 MYCBP2O75592 4640 aa15.26■□□□□ 0.03
SHMT1-206ENST00000579558 LOC389332A0A1B0GUA5 103 aa15.25■□□□□ 0.03
SHMT1-206ENST00000579558 COX7A2LO14548 114 aa15.25■□□□□ 0.03
SHMT1-206ENST00000579558 MALP21145 153 aa15.25■□□□□ 0.03
SHMT1-206ENST00000579558 COX6A2Q02221 97 aa15.25■□□□□ 0.03
SHMT1-206ENST00000579558 LINC00526Q96FQ7 95 aa15.25■□□□□ 0.03
SHMT1-206ENST00000579558 SEC11CQ9BY50 192 aa15.25■□□□□ 0.03
SHMT1-206ENST00000579558 CTDSP1Q9GZU7 261 aa15.25■□□□□ 0.03
SHMT1-206ENST00000579558 DMBT1Q9UGM3 2413 aaPredicted RBP15.25■□□□□ 0.03
SHMT1-206ENST00000579558 PRSS47A8MTI9 375 aa15.24■□□□□ 0.03
SHMT1-206ENST00000579558 ZNF561-AS1K7EIQ3 104 aa15.23■□□□□ 0.03
SHMT1-206ENST00000579558 MRPS36P82909 103 aaKnown RBP15.23■□□□□ 0.03
SHMT1-206ENST00000579558 SPACA4Q8TDM5 124 aa15.23■□□□□ 0.03
SHMT1-206ENST00000579558 FAM104AQ969W3 186 aa15.23■□□□□ 0.03
SHMT1-206ENST00000579558 OPRPNQ99935 248 aaPredicted RBP15.23■□□□□ 0.03
SHMT1-206ENST00000579558 KRTAP10-4P60372 401 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-206ENST00000579558 PRSS3P2Q8NHM4 247 aa15.22■□□□□ 0.03
SHMT1-206ENST00000579558 RPL37AP61513 92 aaKnown RBP15.21■□□□□ 0.03
SHMT1-206ENST00000579558 CARD19Q96LW7 228 aa15.21■□□□□ 0.03
SHMT1-206ENST00000579558 A0A087WYN8 130 aa15.2■□□□□ 0.02
SHMT1-206ENST00000579558 IFI27P40305 119 aaPredicted RBP15.2■□□□□ 0.02
SHMT1-206ENST00000579558 C5orf38Q86SI9 138 aa15.2■□□□□ 0.02
SHMT1-206ENST00000579558 Q8N8P6 123 aa15.2■□□□□ 0.02
SHMT1-206ENST00000579558 TRAV9-1A0A075B6T8 112 aa15.19■□□□□ 0.02
SHMT1-206ENST00000579558 IGKV2-24A0A0C4DH68 120 aa15.19■□□□□ 0.02
SHMT1-206ENST00000579558 IFITM10A6NMD0 228 aa15.19■□□□□ 0.02
SHMT1-206ENST00000579558 SYCNQ0VAF6 134 aa15.18■□□□□ 0.02
SHMT1-206ENST00000579558 IGLV4-69A0A075B6H9 119 aa15.17■□□□□ 0.02
SHMT1-206ENST00000579558 APOMO95445 188 aa15.17■□□□□ 0.02
SHMT1-206ENST00000579558 S100PP25815 95 aa15.17■□□□□ 0.02
SHMT1-206ENST00000579558 MAJINQ3KP22 176 aa15.17■□□□□ 0.02
SHMT1-206ENST00000579558 PKIGQ9Y2B9 76 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 170.3 ms