RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 CHAC1Q9BUX1 264 aa9.61□□□□□ -0.87
SS18-212ENST00000579061 IGKV3OR2-268A0A0C4DH90 116 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 GAGE12HA6NDE8 117 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 TCAPO15273 167 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 INAFM2P0DMQ5 153 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 FCER1GP30273 86 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 CKS2P33552 79 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 SCXQ7RTU7 201 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 CHCHD10Q8WYQ3 142 aaPredicted RBP9.6□□□□□ -0.87
SS18-212ENST00000579061 AP5S1Q9NUS5 200 aa9.6□□□□□ -0.87
SS18-212ENST00000579061 SRRM2Q9UQ35 2752 aaKnown RBP9.59□□□□□ -0.87
SS18-212ENST00000579061 hDV102S1A0JD36 115 aa9.59□□□□□ -0.87
SS18-212ENST00000579061 ANAPC16Q96DE5 110 aa9.59□□□□□ -0.87
SS18-212ENST00000579061 CDC42SE2Q9NRR3 84 aa9.59□□□□□ -0.87
SS18-212ENST00000579061 CSDC2Q9Y534 153 aaKnown RBP9.59□□□□□ -0.87
SS18-212ENST00000579061 PHOX2AO14813 284 aa9.58□□□□□ -0.88
SS18-212ENST00000579061 PPBPP02775 128 aa9.58□□□□□ -0.88
SS18-212ENST00000579061 MT-ND4LP03901 98 aa9.58□□□□□ -0.88
SS18-212ENST00000579061 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.57□□□□□ -0.88
SS18-212ENST00000579061 LINC00959A0A1B0GUT2 108 aa9.57□□□□□ -0.88
SS18-212ENST00000579061 TNFRSF6BO95407 300 aa9.57□□□□□ -0.88
SS18-212ENST00000579061 PLA2G1BP04054 148 aaKnown RBP9.57□□□□□ -0.88
SS18-212ENST00000579061 LINC00528Q8N1L1 170 aa9.57□□□□□ -0.88
SS18-212ENST00000579061 ZNF664Q8N3J9 261 aa9.57□□□□□ -0.88
SS18-212ENST00000579061 C15orf56Q8N910 161 aa9.57□□□□□ -0.88
SS18-212ENST00000579061 CIRBP-AS1Q8TBR5 109 aa9.57□□□□□ -0.88
SS18-212ENST00000579061 TMEM18Q96B42 140 aa9.57□□□□□ -0.88
SS18-212ENST00000579061 D6R8Y8 96 aa9.56□□□□□ -0.88
SS18-212ENST00000579061 FOXI1Q12951 378 aa9.56□□□□□ -0.88
SS18-212ENST00000579061 SS18Q15532 418 aa9.56□□□□□ -0.88
SS18-212ENST00000579061 UQCC3Q6UW78 93 aa9.56□□□□□ -0.88
SS18-212ENST00000579061 SDIM1Q6ZPB5 146 aa9.56□□□□□ -0.88
SS18-212ENST00000579061 TIMM21Q9BVV7 248 aa9.56□□□□□ -0.88
SS18-212ENST00000579061 SMIM2Q9BVW6 85 aa9.56□□□□□ -0.88
SS18-212ENST00000579061 CCL25O15444 150 aa9.55□□□□□ -0.88
SS18-212ENST00000579061 IFITM2Q01629 132 aa9.55□□□□□ -0.88
SS18-212ENST00000579061 UBE2D4Q9Y2X8 147 aa9.55□□□□□ -0.88
SS18-212ENST00000579061 IGHV3-64A0A075B6Q5 118 aa9.54□□□□□ -0.88
SS18-212ENST00000579061 NPYP01303 97 aa9.54□□□□□ -0.88
SS18-212ENST00000579061 SLPIP03973 132 aa9.54□□□□□ -0.88
SS18-212ENST00000579061 ORMDL3Q8N138 153 aa9.54□□□□□ -0.88
SS18-212ENST00000579061 GVQW2A0A096LPI5 108 aaPredicted RBP9.53□□□□□ -0.88
SS18-212ENST00000579061 XCL1P47992 114 aa9.53□□□□□ -0.88
SS18-212ENST00000579061 CD164L2Q6UWJ8 174 aa9.53□□□□□ -0.88
SS18-212ENST00000579061 TMEM136Q6ZRR5 245 aa9.53□□□□□ -0.88
SS18-212ENST00000579061 FLG2Q5D862 2391 aaPredicted RBP9.53□□□□□ -0.88
SS18-212ENST00000579061 IGHV1-58A0A0C4DH39 117 aa9.52□□□□□ -0.89
SS18-212ENST00000579061 C1orf196B1AJZ1 125 aa9.52□□□□□ -0.89
SS18-212ENST00000579061 CIRBPQ14011 172 aaKnown RBP9.52□□□□□ -0.89
SS18-212ENST00000579061 PRELID3AQ96N28 172 aa9.52□□□□□ -0.89
SS18-212ENST00000579061 LAMTOR2Q9Y2Q5 125 aa9.52□□□□□ -0.89
SS18-212ENST00000579061 TMEM218A2RU14 115 aa9.51□□□□□ -0.89
SS18-212ENST00000579061 PRSS47A8MTI9 375 aa9.51□□□□□ -0.89
SS18-212ENST00000579061 HIGD2BQ4VC39 106 aa9.51□□□□□ -0.89
SS18-212ENST00000579061 IMMP2LQ96T52 175 aa9.51□□□□□ -0.89
SS18-212ENST00000579061 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.51□□□□□ -0.89
SS18-212ENST00000579061 SPANXA1Q9NS26 97 aa9.5□□□□□ -0.89
SS18-212ENST00000579061 ADCYAP1P18509 176 aa9.49□□□□□ -0.89
SS18-212ENST00000579061 MRPS36P82909 103 aaKnown RBP9.49□□□□□ -0.89
SS18-212ENST00000579061 CTDSP1Q9GZU7 261 aa9.49□□□□□ -0.89
SS18-212ENST00000579061 PANO1I0J062 215 aa9.48□□□□□ -0.89
SS18-212ENST00000579061 RAB5AP20339 215 aa9.48□□□□□ -0.89
SS18-212ENST00000579061 RPL39P62891 51 aaKnown RBP9.48□□□□□ -0.89
SS18-212ENST00000579061 Q6ZUT4 128 aa9.48□□□□□ -0.89
SS18-212ENST00000579061 SEC11CQ9BY50 192 aa9.48□□□□□ -0.89
SS18-212ENST00000579061 MYCBP2O75592 4640 aa9.47□□□□□ -0.89
SS18-212ENST00000579061 TRAV9-1A0A075B6T8 112 aa9.47□□□□□ -0.89
SS18-212ENST00000579061 TRAV13-1A0A0B4J241 112 aa9.47□□□□□ -0.89
SS18-212ENST00000579061 KRTAP10-4P60372 401 aaPredicted RBP9.47□□□□□ -0.89
SS18-212ENST00000579061 RNASE13Q5GAN3 156 aaKnown RBP9.47□□□□□ -0.89
SS18-212ENST00000579061 MAP1LC3AQ9H492 121 aa9.47□□□□□ -0.89
SS18-212ENST00000579061 PKIGQ9Y2B9 76 aa9.47□□□□□ -0.89
SS18-212ENST00000579061 DMBT1Q9UGM3 2413 aaPredicted RBP9.47□□□□□ -0.89
SS18-212ENST00000579061 ZNF561-AS1K7EIQ3 104 aa9.46□□□□□ -0.9
SS18-212ENST00000579061 COX7A2LO14548 114 aa9.46□□□□□ -0.9
SS18-212ENST00000579061 SPACA4Q8TDM5 124 aa9.46□□□□□ -0.9
SS18-212ENST00000579061 FAM104AQ969W3 186 aa9.46□□□□□ -0.9
SS18-212ENST00000579061 MALP21145 153 aa9.45□□□□□ -0.9
SS18-212ENST00000579061 COX6A2Q02221 97 aa9.45□□□□□ -0.9
SS18-212ENST00000579061 PYGO1Q9Y3Y4 419 aa9.45□□□□□ -0.9
SS18-212ENST00000579061 A0A087WYN8 130 aa9.44□□□□□ -0.9
SS18-212ENST00000579061 IFI27P40305 119 aaPredicted RBP9.44□□□□□ -0.9
SS18-212ENST00000579061 COMMD7Q86VX2 200 aa9.44□□□□□ -0.9
SS18-212ENST00000579061 Q8N8P6 123 aa9.44□□□□□ -0.9
SS18-212ENST00000579061 PRSS3P2Q8NHM4 247 aa9.44□□□□□ -0.9
SS18-212ENST00000579061 DPH3Q96FX2 82 aa9.44□□□□□ -0.9
SS18-212ENST00000579061 CARD19Q96LW7 228 aa9.44□□□□□ -0.9
SS18-212ENST00000579061 LOC389332A0A1B0GUA5 103 aa9.43□□□□□ -0.9
SS18-212ENST00000579061 K7EMI3 77 aa9.43□□□□□ -0.9
SS18-212ENST00000579061 APOMO95445 188 aa9.43□□□□□ -0.9
SS18-212ENST00000579061 CHTF8P0CG12 524 aa9.43□□□□□ -0.9
SS18-212ENST00000579061 RPL37AP61513 92 aaKnown RBP9.43□□□□□ -0.9
SS18-212ENST00000579061 SYCNQ0VAF6 134 aa9.43□□□□□ -0.9
SS18-212ENST00000579061 NDUFA5Q16718 116 aa9.43□□□□□ -0.9
SS18-212ENST00000579061 PLAC8Q9NZF1 115 aa9.43□□□□□ -0.9
SS18-212ENST00000579061 PKHD1L1Q86WI1 4243 aa9.42□□□□□ -0.9
SS18-212ENST00000579061 LINC00526Q96FQ7 95 aa9.42□□□□□ -0.9
SS18-212ENST00000579061 C2orf48Q96LS8 159 aa9.42□□□□□ -0.9
SS18-212ENST00000579061 OPRPNQ99935 248 aaPredicted RBP9.42□□□□□ -0.9
SS18-212ENST00000579061 NXT2Q9NPJ8 142 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms