RNA–Protein interactions for RNA: ENST00000576222.1

PCDHGB3-201, Transcript of protocadherin gamma subfamily B, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGB3, Length 4,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3-201ENST00000576222 BPTFQ12830 3046 aa9.71□□□□□ -0.85
PCDHGB3-201ENST00000576222 SLPIP03973 132 aa9.71□□□□□ -0.85
PCDHGB3-201ENST00000576222 NCR3O14931 201 aa9.71□□□□□ -0.86
PCDHGB3-201ENST00000576222 UPK3BQ9BT76 320 aa9.71□□□□□ -0.86
PCDHGB3-201ENST00000576222 LINC00694P0DN24 101 aa9.71□□□□□ -0.86
PCDHGB3-201ENST00000576222 SMCPP49901 116 aaPredicted RBP9.7□□□□□ -0.86
PCDHGB3-201ENST00000576222 USP17L23D6RBM5 183 aa9.7□□□□□ -0.86
PCDHGB3-201ENST00000576222 MAP6D1Q9H9H5 199 aa9.69□□□□□ -0.86
PCDHGB3-201ENST00000576222 LINC01546A6NGU7 62 aa9.69□□□□□ -0.86
PCDHGB3-201ENST00000576222 UBE2D4Q9Y2X8 147 aa9.69□□□□□ -0.86
PCDHGB3-201ENST00000576222 Q6ZTI0 123 aa9.69□□□□□ -0.86
PCDHGB3-201ENST00000576222 CXCL5P42830 114 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 ATP5EP2Q5VTU8 51 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 Q6ZSV7 163 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 FAM236DA0A1B0GTK5 79 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 FAM236CP0DP71 79 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 H3BQ85 93 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 ENHOQ6UWT2 76 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 LRRC75A-AS1Q8N1F1 130 aa9.68□□□□□ -0.86
PCDHGB3-201ENST00000576222 M0QXV9 152 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 NREPQ16612 68 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 FAM222AQ5U5X8 452 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 NOTCH2Q04721 2471 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 FAM110AQ9BQ89 295 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 IBA57-AS1B1ANH7 110 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 NDUFC2O95298 119 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 PDE6GP18545 87 aa9.67□□□□□ -0.86
PCDHGB3-201ENST00000576222 Q96MF0 132 aa9.66□□□□□ -0.86
PCDHGB3-201ENST00000576222 PTPRBP23467 1997 aa9.66□□□□□ -0.86
PCDHGB3-201ENST00000576222 DEFB105AQ8NG35 78 aa9.66□□□□□ -0.86
PCDHGB3-201ENST00000576222 ZNF580Q9UK33 172 aa9.66□□□□□ -0.86
PCDHGB3-201ENST00000576222 ADAMTSL4-AS1Q5T5F5 129 aa9.65□□□□□ -0.86
PCDHGB3-201ENST00000576222 C11orf71Q6IPW1 123 aa9.65□□□□□ -0.86
PCDHGB3-201ENST00000576222 PRRC2AP48634 2157 aaKnown RBP9.65□□□□□ -0.86
PCDHGB3-201ENST00000576222 DCANP1Q8TF63 244 aa9.65□□□□□ -0.86
PCDHGB3-201ENST00000576222 LINC00526Q96FQ7 95 aa9.65□□□□□ -0.87
PCDHGB3-201ENST00000576222 SONP18583 2426 aaKnown RBP9.64□□□□□ -0.87
PCDHGB3-201ENST00000576222 FUSP35637 526 aaKnown RBP eCLIP9.64□□□□□ -0.87
PCDHGB3-201ENST00000576222 MYO18BQ8IUG5 2567 aa9.63□□□□□ -0.87
PCDHGB3-201ENST00000576222 DIRC1Q969H9 104 aa9.63□□□□□ -0.87
PCDHGB3-201ENST00000576222 SPAG11BQ08648 103 aa9.63□□□□□ -0.87
PCDHGB3-201ENST00000576222 BRK1Q8WUW1 75 aa9.63□□□□□ -0.87
PCDHGB3-201ENST00000576222 SMIM11BQ8TCY0 68 aa9.63□□□□□ -0.87
PCDHGB3-201ENST00000576222 C10orf99Q6UWK7 81 aa9.62□□□□□ -0.87
PCDHGB3-201ENST00000576222 CAMK2N2Q96S95 79 aa9.62□□□□□ -0.87
PCDHGB3-201ENST00000576222 IGF2RP11717 2491 aa9.62□□□□□ -0.87
PCDHGB3-201ENST00000576222 PRM2P04554 102 aa9.62□□□□□ -0.87
PCDHGB3-201ENST00000576222 IGHV4-28A0A0C4DH34 117 aa9.61□□□□□ -0.87
PCDHGB3-201ENST00000576222 Q6JHZ5 121 aa9.61□□□□□ -0.87
PCDHGB3-201ENST00000576222 APOC4P55056 127 aa9.61□□□□□ -0.87
PCDHGB3-201ENST00000576222 C4orf3Q8WVX3 66 aa9.61□□□□□ -0.87
PCDHGB3-201ENST00000576222 ESM1Q9NQ30 184 aa9.61□□□□□ -0.87
PCDHGB3-201ENST00000576222 CITED2Q99967 270 aaPredicted RBP9.6□□□□□ -0.87
PCDHGB3-201ENST00000576222 AMELXQ99217 191 aa9.6□□□□□ -0.87
PCDHGB3-201ENST00000576222 NAV2Q8IVL1 2488 aa9.6□□□□□ -0.87
PCDHGB3-201ENST00000576222 SMIM9A6NGZ8 99 aa9.6□□□□□ -0.87
PCDHGB3-201ENST00000576222 LINC00242Q5T6M2 205 aa9.6□□□□□ -0.87
PCDHGB3-201ENST00000576222 NRGNQ92686 78 aa9.6□□□□□ -0.87
PCDHGB3-201ENST00000576222 A0A0C4DFX4 3053 aa9.6□□□□□ -0.87
PCDHGB3-201ENST00000576222 CCDC168Q8NDH2 2452 aa9.59□□□□□ -0.87
PCDHGB3-201ENST00000576222 HIGD2BQ4VC39 106 aa9.59□□□□□ -0.87
PCDHGB3-201ENST00000576222 PRRC2CQ9Y520 2896 aaKnown RBP9.59□□□□□ -0.87
PCDHGB3-201ENST00000576222 DEFB114Q30KQ6 69 aa9.59□□□□□ -0.87
PCDHGB3-201ENST00000576222 C6orf99Q4VX62 202 aa9.58□□□□□ -0.88
PCDHGB3-201ENST00000576222 RAI1Q7Z5J4 1906 aaPredicted RBP9.58□□□□□ -0.88
PCDHGB3-201ENST00000576222 IGLV1-40P01703 118 aa9.58□□□□□ -0.88
PCDHGB3-201ENST00000576222 PRO0255Q9UI72 69 aa9.58□□□□□ -0.88
PCDHGB3-201ENST00000576222 KLK5Q9Y337 293 aaPredicted RBP9.58□□□□□ -0.88
PCDHGB3-201ENST00000576222 SHISA2Q6UWI4 295 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 KIF25-AS1Q9Y6Z4 181 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 TRBV7-7A0A0K0K1E9 115 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 COX7BP24311 80 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 A0A087WVE0 104 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 TRBV6-8A0A0A6YYG3 113 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 EDN2P20800 178 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 SCXQ7RTU7 201 aa9.57□□□□□ -0.88
PCDHGB3-201ENST00000576222 SMIM1B2RUZ4 78 aa9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 CCL18P55774 89 aa9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 FAM19A5Q7Z5A7 132 aaPredicted RBP9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 SBSPONQ8IVN8 264 aa9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 COL4A2P08572 1712 aa9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 CHCHD7Q9BUK0 85 aa9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 RPL28P46779 137 aaKnown RBP9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 IGKV2D-24A0A075B6R9 120 aa9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 KLK12Q9UKR0 248 aa9.56□□□□□ -0.88
PCDHGB3-201ENST00000576222 CDK2AP2O75956 126 aa9.55□□□□□ -0.88
PCDHGB3-201ENST00000576222 PRB2P02812 416 aaPredicted RBP9.55□□□□□ -0.88
PCDHGB3-201ENST00000576222 LINC00269Q8N2A0 174 aa9.55□□□□□ -0.88
PCDHGB3-201ENST00000576222 CDC42SE2Q9NRR3 84 aa9.55□□□□□ -0.88
PCDHGB3-201ENST00000576222 ETDCA0A1B0GVM5 59 aa9.55□□□□□ -0.88
PCDHGB3-201ENST00000576222 WFDC9Q8NEX5 89 aa9.55□□□□□ -0.88
PCDHGB3-201ENST00000576222 PPDPFQ9H3Y8 114 aa9.55□□□□□ -0.88
PCDHGB3-201ENST00000576222 TRBV6-4A0A1B0GX49 114 aa9.54□□□□□ -0.88
PCDHGB3-201ENST00000576222 HRCT1Q6UXD1 115 aa9.54□□□□□ -0.88
PCDHGB3-201ENST00000576222 HIVEP3Q5T1R4 2406 aa9.54□□□□□ -0.88
PCDHGB3-201ENST00000576222 USP9XQ93008 2570 aaPredicted RBP9.54□□□□□ -0.88
PCDHGB3-201ENST00000576222 COX6A2Q02221 97 aa9.54□□□□□ -0.88
PCDHGB3-201ENST00000576222 MPLKIPQ8TAP9 179 aa9.54□□□□□ -0.88
PCDHGB3-201ENST00000576222 PKIGQ9Y2B9 76 aa9.54□□□□□ -0.88
PCDHGB3-201ENST00000576222 LOC107984640A0A0U1RRK4 108 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms