RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ZNF876PQ49A33 203 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 ZFAND6Q6FIF0 208 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 TRPT1Q86TN4 253 aaKnown RBP4.26□□□□□ -1.73
VPS39-209ENST00000568029 STHQ8IWL8 128 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 RPL39LQ96EH5 51 aaKnown RBP4.26□□□□□ -1.73
VPS39-209ENST00000568029 LINC01587Q99440 93 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 CITED2Q99967 270 aaPredicted RBP4.26□□□□□ -1.73
VPS39-209ENST00000568029 SPXQ9BT56 116 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 KRTAP1-5Q9BYS1 174 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 ZMAT5Q9UDW3 170 aaKnown RBP4.26□□□□□ -1.73
VPS39-209ENST00000568029 CYSLTR1Q9Y271 337 aa4.26□□□□□ -1.73
VPS39-209ENST00000568029 A8MWV9 139 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 M0R2P5 195 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 CRYGDP07320 174 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 HTN1P15515 57 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 PLNP26678 52 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 HINT1P49773 126 aaPredicted RBP4.25□□□□□ -1.73
VPS39-209ENST00000568029 POLR2KP53803 58 aaKnown RBP4.25□□□□□ -1.73
VPS39-209ENST00000568029 ZNF56Q15929 161 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 ERASQ7Z444 233 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 MUC7Q8TAX7 377 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 PHLDA1Q8WV24 401 aaPredicted RBP4.25□□□□□ -1.73
VPS39-209ENST00000568029 TMEM141Q96I45 108 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 Q9H8V8 135 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 JPT2Q9H910 190 aa4.25□□□□□ -1.73
VPS39-209ENST00000568029 ZNF256Q9Y2P7 627 aaPredicted RBP4.25□□□□□ -1.73
VPS39-209ENST00000568029 KMT2AQ03164 3969 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 SDHAF1A6NFY7 115 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 M0QY20 66 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 RHOHQ15669 191 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 TMEM97Q5BJF2 176 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 FAM74A4Q5TZK3 123 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 C2orf66Q6UXQ4 117 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 BOD1L2Q8IYS8 172 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 STPG4Q8N801 248 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 MAPKAPK5-AS1Q8N8E1 139 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 TMEM208Q9BTX3 173 aa4.24□□□□□ -1.73
VPS39-209ENST00000568029 CHTOPQ9Y3Y2 248 aaKnown RBP4.24□□□□□ -1.73
VPS39-209ENST00000568029 DYNC1H1Q14204 4646 aaKnown RBP4.23□□□□□ -1.73
VPS39-209ENST00000568029 IGLV9-49A0A0B4J1Y8 123 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 TRBV27A0A0K0K1C4 114 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 KRTAP29-1A8MX34 341 aaPredicted RBP4.23□□□□□ -1.73
VPS39-209ENST00000568029 F8VRH5 84 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 I3L3M4 83 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 SAP30O75446 220 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 ZNF25P17030 456 aaPredicted RBP4.23□□□□□ -1.73
VPS39-209ENST00000568029 NMUP48645 174 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 MPV17L2Q567V2 206 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 ZFP2Q6ZN57 461 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 NDUFA11Q86Y39 141 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 DNAJC30Q96LL9 226 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 EDA2RQ9HAV5 297 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 MRPL35Q9NZE8 188 aaKnown RBP4.23□□□□□ -1.73
VPS39-209ENST00000568029 HHLA3Q9XRX5 114 aa4.23□□□□□ -1.73
VPS39-209ENST00000568029 SMIM1B2RUZ4 78 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 IGLV1-51P01701 117 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 RBMY1A1P0DJD3 496 aaKnown RBP4.22□□□□□ -1.73
VPS39-209ENST00000568029 RBMY1CP0DJD4 496 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 FGF6P10767 208 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 SEC11AP67812 179 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 HSD52Q0P140 79 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 PMVKQ15126 192 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 RBMY1FQ15415 496 aaKnown RBP4.22□□□□□ -1.73
VPS39-209ENST00000568029 BVES-AS1Q5T3Y7 98 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 ZC2HC1BQ5TFG8 222 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 GTSCR1Q86UQ5 136 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 ORAOV1Q8WV07 137 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 BAALCQ8WXS3 180 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 TIMM17AQ99595 171 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 HIGD1BQ9P298 99 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 XCL2Q9UBD3 114 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 TP53TG1Q9Y2A0 90 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 VPS13DQ5THJ4 4388 aa4.22□□□□□ -1.73
VPS39-209ENST00000568029 PKHD1P08F94 4074 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 A6NDN8 102 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 RS1O15537 224 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 HERVK_113P61574 105 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 CFAP126Q5VTH2 177 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 MORN3Q6PF18 240 aaPredicted RBP4.21□□□□□ -1.74
VPS39-209ENST00000568029 C2orf91Q6ZV80 131 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 NEGR1Q7Z3B1 354 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 LINC00469Q8N7U9 141 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 FAT2Q9NYQ8 4349 aa4.21□□□□□ -1.74
VPS39-209ENST00000568029 IGHV3OR16-12A0A075B7B8 117 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 IGIPA6NJ69 53 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 CIDEAO60543 219 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 IGHV3-53P01767 116 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 INSL3P51460 131 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 CRYBA4P53673 196 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 PCP2Q8IVA1 136 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 C1orf158Q8N1D5 194 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 C20orf203Q8NBC4 194 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 OR11H2Q8NH07 326 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 CST9LQ9H4G1 147 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 DNAH2Q9P225 4427 aa4.2□□□□□ -1.74
VPS39-209ENST00000568029 IGHV3-73A0A0B4J1V6 119 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 TRAV8-6A0A0B4J262 113 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 E9PLD3 99 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 AZU1P20160 251 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 TCTAP57738 103 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms