RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-215	ENST00000566843	SDIM1	Q6ZPB5	146 aa		11.34	□□□□□ -0.59
COMMD4-215	ENST00000566843	SPG11	Q96JI7	2443 aa		11.34	□□□□□ -0.59
COMMD4-215	ENST00000566843	IGHV3-53	P01767	116 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	SYNJ2BP	P57105	145 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	CCL19	Q99731	98 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	TENM4	Q6N022	2769 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	ATP5J2	P56134	94 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	ZNF415	Q09FC8	603 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	BEAN1	Q3B7T3	259 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	FAM19A3	Q7Z5A8	133 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	VPS13C	Q709C8	3753 aa		11.33	□□□□□ -0.6
COMMD4-215	ENST00000566843	ASH1L	Q9NR48	2969 aa	Known RBP	11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	USP9Y	O00507	2555 aa	Predicted RBP	11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	TRAC	P01848	142 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	COX6A2	Q02221	97 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	LINC00643	Q86TS7	51 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	COPS9	Q8WXC6	57 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	DUX5	Q96PT3	197 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	SMCR5	Q8TEV8	140 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	PPDPF	Q9H3Y8	114 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843		Q9H8V8	135 aa		11.32	□□□□□ -0.6
COMMD4-215	ENST00000566843	HTN1	P15515	57 aa		11.31	□□□□□ -0.6
COMMD4-215	ENST00000566843	FBN2	P35556	2912 aa		11.31	□□□□□ -0.6
COMMD4-215	ENST00000566843	IGHV3OR16-12	A0A075B7B8	117 aa		11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	FAM236A	A0A1B0GUQ0	79 aa		11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	FAM236B	A0A1B0GV22	79 aa		11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	RBMY1B	A6NDE4	496 aa	Known RBP	11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	RBMY1E	A6NEQ0	496 aa	Known RBP	11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	MSMB	P08118	114 aa		11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	RBMY1D	P0C7P1	496 aa	Known RBP	11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	HERVK_113	P63121	156 aa		11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	SOSTDC1	Q6X4U4	206 aa		11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	IGHV3-38	A0A0C4DH36	116 aa		11.3	□□□□□ -0.6
COMMD4-215	ENST00000566843	CELSR2	Q9HCU4	2923 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	LINC00242	Q5T6M2	205 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	HIST2H2BC	Q6DN03	193 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	C22orf24	Q9Y442	160 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	RS1	O15537	224 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	AVP	P01185	164 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	PRM2	P04554	102 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843		Q8N2B8	174 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	C11orf72	Q8NBR9	251 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	ZFHX3	Q15911	3703 aa		11.29	□□□□□ -0.6
COMMD4-215	ENST00000566843	CENPE	Q02224	2701 aa		11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	FAM222A	Q5U5X8	452 aa		11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	NBPF19	A0A087WUL8	3843 aa		11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	HOXD3	P31249	432 aa	Predicted RBP	11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	DEFB131A	P59861	70 aa		11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	KRTAP10-9	P60411	292 aa		11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	DAZ2	Q13117	558 aa	Known RBP	11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	DAZ4	Q86SG3	579 aa	Known RBP	11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	ZNF625	Q96I27	306 aa	Predicted RBP	11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	DAZ3	Q9NR90	486 aa	Known RBP	11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	PEMT	Q9UBM1	199 aa		11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	HELZ2	Q9BYK8	2649 aa	Known RBP	11.28	□□□□□ -0.6
COMMD4-215	ENST00000566843	SMIM1	B2RUZ4	78 aa		11.27	□□□□□ -0.61
COMMD4-215	ENST00000566843	WIPF1	O43516	503 aa		11.27	□□□□□ -0.61
COMMD4-215	ENST00000566843	DGAT2L7P	Q6IED9	249 aa		11.27	□□□□□ -0.61
COMMD4-215	ENST00000566843	IGHV4-30-2	A0A087WSY4	118 aa		11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	IGHV4-59	P01825	116 aa		11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	ATP5G1	P05496	136 aa		11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	BAALC-AS2	P0C853	105 aa		11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	CSDC2	Q9Y534	153 aa	Known RBP	11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	CXCL5	P42830	114 aa		11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	C5orf38	Q86SI9	138 aa		11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	C3orf22	Q8N5N4	141 aa		11.26	□□□□□ -0.61
COMMD4-215	ENST00000566843	POLQ	O75417	2590 aa		11.25	□□□□□ -0.61
COMMD4-215	ENST00000566843	PTPN13	Q12923	2485 aa		11.25	□□□□□ -0.61
COMMD4-215	ENST00000566843	SORL1	Q92673	2214 aa		11.25	□□□□□ -0.61
COMMD4-215	ENST00000566843	DEFB112	Q30KQ8	113 aa		11.24	□□□□□ -0.61
COMMD4-215	ENST00000566843	UBE2E2	Q96LR5	201 aa		11.24	□□□□□ -0.61
COMMD4-215	ENST00000566843	FAM218A	Q96MZ4	157 aa		11.24	□□□□□ -0.61
COMMD4-215	ENST00000566843	TRAV25	A0A0B4J276	109 aa		11.23	□□□□□ -0.61
COMMD4-215	ENST00000566843		A0A0U1RRA0	63 aa		11.23	□□□□□ -0.61
COMMD4-215	ENST00000566843		F5H768	121 aa		11.23	□□□□□ -0.61
COMMD4-215	ENST00000566843	UQCRQ	O14949	82 aa		11.23	□□□□□ -0.61
COMMD4-215	ENST00000566843	INAFM2	P0DMQ5	153 aa		11.23	□□□□□ -0.61
COMMD4-215	ENST00000566843	C3orf56	Q8N813	242 aa		11.23	□□□□□ -0.61
COMMD4-215	ENST00000566843		B4DSR2	109 aa		11.22	□□□□□ -0.61
COMMD4-215	ENST00000566843	PRIMA1	Q86XR5	153 aa		11.22	□□□□□ -0.61
COMMD4-215	ENST00000566843	LINC00526	Q96FQ7	95 aa		11.22	□□□□□ -0.61
COMMD4-215	ENST00000566843	ABCA12	Q86UK0	2595 aa		11.22	□□□□□ -0.61
COMMD4-215	ENST00000566843	LINC00694	P0DN24	101 aa		11.21	□□□□□ -0.61
COMMD4-215	ENST00000566843	PF4	P02776	101 aa		11.21	□□□□□ -0.62
COMMD4-215	ENST00000566843	RPL28	P46779	137 aa	Known RBP	11.21	□□□□□ -0.62
COMMD4-215	ENST00000566843	C9orf153	Q5TBE3	101 aa		11.21	□□□□□ -0.62
COMMD4-215	ENST00000566843	NDUFA7	O95182	113 aa		11.2	□□□□□ -0.62
COMMD4-215	ENST00000566843	HIST2H2BD	Q6DRA6	164 aa		11.2	□□□□□ -0.62
COMMD4-215	ENST00000566843	MAP1A	P78559	2803 aa	Predicted RBP	11.2	□□□□□ -0.62
COMMD4-215	ENST00000566843	TRAV13-2	A0A0B4J235	113 aa		11.19	□□□□□ -0.62
COMMD4-215	ENST00000566843	INS	P01308	110 aa		11.19	□□□□□ -0.62
COMMD4-215	ENST00000566843	MAL	P21145	153 aa		11.19	□□□□□ -0.62
COMMD4-215	ENST00000566843	HIST1H4A	P62805	103 aa	Known RBP	11.19	□□□□□ -0.62
COMMD4-215	ENST00000566843	MAP6D1	Q9H9H5	199 aa		11.19	□□□□□ -0.62
COMMD4-215	ENST00000566843	SLURP1	P55000	103 aa		11.18	□□□□□ -0.62
COMMD4-215	ENST00000566843	CDC42SE2	Q9NRR3	84 aa		11.18	□□□□□ -0.62
COMMD4-215	ENST00000566843	GCN1	Q92616	2671 aa	Known RBP	11.18	□□□□□ -0.62
COMMD4-215	ENST00000566843	TRAV13-1	A0A0B4J241	112 aa		11.18	□□□□□ -0.62
COMMD4-215	ENST00000566843	NTM-AS1	Q6ZSK4	140 aa		11.18	□□□□□ -0.62
COMMD4-215	ENST00000566843	IL17D	Q8TAD2	202 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms