RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 KIAA1644Q3SXP7 199 aa11.51□□□□□ -0.57
CLN3-217ENST00000565354 C20orf203Q8NBC4 194 aa11.51□□□□□ -0.57
CLN3-217ENST00000565354 TGIF2-C20orf24A0A0A6YYL0 155 aa11.5□□□□□ -0.57
CLN3-217ENST00000565354 INAFM2P0DMQ5 153 aa11.5□□□□□ -0.57
CLN3-217ENST00000565354 ZNF25P17030 456 aaPredicted RBP11.5□□□□□ -0.57
CLN3-217ENST00000565354 REG3AQ06141 175 aa11.5□□□□□ -0.57
CLN3-217ENST00000565354 MIAQ16674 131 aa11.5□□□□□ -0.57
CLN3-217ENST00000565354 ENHOQ6UWT2 76 aa11.5□□□□□ -0.57
CLN3-217ENST00000565354 VPS13BQ7Z7G8 4022 aa11.5□□□□□ -0.57
CLN3-217ENST00000565354 FABP9Q0Z7S8 132 aa11.49□□□□□ -0.57
CLN3-217ENST00000565354 DGAT2L7PQ6IED9 249 aa11.49□□□□□ -0.57
CLN3-217ENST00000565354 OR5A1Q8NGJ0 315 aa11.49□□□□□ -0.57
CLN3-217ENST00000565354 MRPL18Q9H0U6 180 aaKnown RBP11.49□□□□□ -0.57
CLN3-217ENST00000565354 MYCBP2O75592 4640 aa11.48□□□□□ -0.57
CLN3-217ENST00000565354 SRRM2Q9UQ35 2752 aaKnown RBP11.48□□□□□ -0.57
CLN3-217ENST00000565354 A0A087WTM6 91 aa11.48□□□□□ -0.57
CLN3-217ENST00000565354 IGKV3OR2-268A0A0C4DH90 116 aa11.48□□□□□ -0.57
CLN3-217ENST00000565354 FLG2Q5D862 2391 aaPredicted RBP11.48□□□□□ -0.57
CLN3-217ENST00000565354 SMCO4Q9NRQ5 59 aa11.47□□□□□ -0.57
CLN3-217ENST00000565354 PRR34Q9NV39 138 aa11.47□□□□□ -0.57
CLN3-217ENST00000565354 TRAPPC1Q9Y5R8 145 aa11.47□□□□□ -0.57
CLN3-217ENST00000565354 PRSS47A8MTI9 375 aa11.46□□□□□ -0.57
CLN3-217ENST00000565354 Q8N8P6 123 aa11.46□□□□□ -0.57
CLN3-217ENST00000565354 IGLV10-54A0A075B6I4 117 aa11.45□□□□□ -0.58
CLN3-217ENST00000565354 TRAV8-4A0A0B4J246 113 aa11.45□□□□□ -0.58
CLN3-217ENST00000565354 MRPL52Q86TS9 123 aaKnown RBP11.45□□□□□ -0.58
CLN3-217ENST00000565354 NXT2Q9NPJ8 142 aaKnown RBP11.45□□□□□ -0.58
CLN3-217ENST00000565354 FAT1Q14517 4588 aa11.44□□□□□ -0.58
CLN3-217ENST00000565354 CBLN2Q8IUK8 224 aa11.44□□□□□ -0.58
CLN3-217ENST00000565354 BAALCQ8WXS3 180 aa11.44□□□□□ -0.58
CLN3-217ENST00000565354 PRSS3P2Q8NHM4 247 aa11.43□□□□□ -0.58
CLN3-217ENST00000565354 UBE2D4Q9Y2X8 147 aa11.43□□□□□ -0.58
CLN3-217ENST00000565354 LRCOL1A6NCL2 159 aa11.42□□□□□ -0.58
CLN3-217ENST00000565354 LECT2O14960 151 aa11.42□□□□□ -0.58
CLN3-217ENST00000565354 IFI27P40305 119 aaPredicted RBP11.42□□□□□ -0.58
CLN3-217ENST00000565354 RPL39P62891 51 aaKnown RBP11.42□□□□□ -0.58
CLN3-217ENST00000565354 ORMDL2Q53FV1 153 aa11.42□□□□□ -0.58
CLN3-217ENST00000565354 ZNF664Q8N3J9 261 aa11.42□□□□□ -0.58
CLN3-217ENST00000565354 ALKBH7Q9BT30 221 aaPredicted RBP11.42□□□□□ -0.58
CLN3-217ENST00000565354 K7EMI3 77 aa11.41□□□□□ -0.58
CLN3-217ENST00000565354 TIMM21Q9BVV7 248 aa11.41□□□□□ -0.58
CLN3-217ENST00000565354 CDC42SE2Q9NRR3 84 aa11.41□□□□□ -0.58
CLN3-217ENST00000565354 Q5VSD8 79 aa11.4□□□□□ -0.58
CLN3-217ENST00000565354 Q8N814 137 aa11.4□□□□□ -0.58
CLN3-217ENST00000565354 SPANXA1Q9NS26 97 aa11.4□□□□□ -0.58
CLN3-217ENST00000565354 PGPEP1Q9NXJ5 209 aa11.4□□□□□ -0.58
CLN3-217ENST00000565354 CSDC2Q9Y534 153 aaKnown RBP11.4□□□□□ -0.58
CLN3-217ENST00000565354 G0S2P27469 103 aa11.39□□□□□ -0.59
CLN3-217ENST00000565354 XGP55808 180 aa11.39□□□□□ -0.59
CLN3-217ENST00000565354 SS18Q15532 418 aa11.39□□□□□ -0.59
CLN3-217ENST00000565354 CYSLTR1Q9Y271 337 aa11.39□□□□□ -0.59
CLN3-217ENST00000565354 GAGE12HA6NDE8 117 aa11.38□□□□□ -0.59
CLN3-217ENST00000565354 C14orf177Q52M58 125 aa11.38□□□□□ -0.59
CLN3-217ENST00000565354 RNASE13Q5GAN3 156 aaKnown RBP11.38□□□□□ -0.59
CLN3-217ENST00000565354 Q6ZUT4 128 aa11.38□□□□□ -0.59
CLN3-217ENST00000565354 FA2HQ7L5A8 372 aa11.38□□□□□ -0.59
CLN3-217ENST00000565354 CHCHD10Q8WYQ3 142 aaPredicted RBP11.38□□□□□ -0.59
CLN3-217ENST00000565354 YPEL4Q96NS1 127 aa11.38□□□□□ -0.59
CLN3-217ENST00000565354 WFDC2Q14508 124 aa11.37□□□□□ -0.59
CLN3-217ENST00000565354 CDPF1Q6NVV7 123 aa11.37□□□□□ -0.59
CLN3-217ENST00000565354 C2orf66Q6UXQ4 117 aa11.37□□□□□ -0.59
CLN3-217ENST00000565354 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.36□□□□□ -0.59
CLN3-217ENST00000565354 IGLV5-52A0A0A0MRZ9 124 aa11.36□□□□□ -0.59
CLN3-217ENST00000565354 LINC00959A0A1B0GUT2 108 aa11.36□□□□□ -0.59
CLN3-217ENST00000565354 FUSP35637 526 aaKnown RBP eCLIP11.36□□□□□ -0.59
CLN3-217ENST00000565354 NTN5Q8WTR8 489 aaPredicted RBP11.36□□□□□ -0.59
CLN3-217ENST00000565354 TRAV13-1A0A0B4J241 112 aa11.35□□□□□ -0.59
CLN3-217ENST00000565354 USP17L23D6RBM5 183 aa11.35□□□□□ -0.59
CLN3-217ENST00000565354 CCL25O15444 150 aa11.35□□□□□ -0.59
CLN3-217ENST00000565354 XCL1P47992 114 aa11.35□□□□□ -0.59
CLN3-217ENST00000565354 MRPS36P82909 103 aaKnown RBP11.34□□□□□ -0.59
CLN3-217ENST00000565354 KRTAP26-1Q6PEX3 210 aa11.34□□□□□ -0.59
CLN3-217ENST00000565354 PYGO1Q9Y3Y4 419 aa11.34□□□□□ -0.59
CLN3-217ENST00000565354 C1orf196B1AJZ1 125 aa11.33□□□□□ -0.6
CLN3-217ENST00000565354 Q6ZN92 141 aa11.33□□□□□ -0.6
CLN3-217ENST00000565354 C18orf32Q8TCD1 76 aa11.33□□□□□ -0.6
CLN3-217ENST00000565354 TMEM141Q96I45 108 aa11.33□□□□□ -0.6
CLN3-217ENST00000565354 OPRPNQ99935 248 aaPredicted RBP11.33□□□□□ -0.6
CLN3-217ENST00000565354 IFITM10A6NMD0 228 aa11.32□□□□□ -0.6
CLN3-217ENST00000565354 RAB5BP61020 215 aa11.32□□□□□ -0.6
CLN3-217ENST00000565354 CFAP161Q6P656 301 aa11.32□□□□□ -0.6
CLN3-217ENST00000565354 IGLV4-3A0A075B6K6 122 aa11.31□□□□□ -0.6
CLN3-217ENST00000565354 TEX43Q6ZNM6 134 aa11.31□□□□□ -0.6
CLN3-217ENST00000565354 AP5S1Q9NUS5 200 aa11.31□□□□□ -0.6
CLN3-217ENST00000565354 LINC01549A6NIU2 74 aa11.3□□□□□ -0.6
CLN3-217ENST00000565354 LINC00614P0C842 121 aa11.3□□□□□ -0.6
CLN3-217ENST00000565354 GCSHP23434 173 aa11.3□□□□□ -0.6
CLN3-217ENST00000565354 CD164L2Q6UWJ8 174 aa11.3□□□□□ -0.6
CLN3-217ENST00000565354 TOMM6Q96B49 74 aa11.3□□□□□ -0.6
CLN3-217ENST00000565354 C2orf88Q9BSF0 95 aa11.3□□□□□ -0.6
CLN3-217ENST00000565354 hDV102S1A0JD36 115 aa11.29□□□□□ -0.6
CLN3-217ENST00000565354 SCO1O75880 301 aa11.29□□□□□ -0.6
CLN3-217ENST00000565354 KRTAP10-1P60331 282 aa11.29□□□□□ -0.6
CLN3-217ENST00000565354 FOXI1Q12951 378 aa11.29□□□□□ -0.6
CLN3-217ENST00000565354 PAPPA-AS1Q5QFB9 102 aa11.29□□□□□ -0.6
CLN3-217ENST00000565354 SCGB3A1Q96QR1 104 aa11.29□□□□□ -0.6
CLN3-217ENST00000565354 VCX2Q9H322 139 aa11.29□□□□□ -0.6
CLN3-217ENST00000565354 LINC01546A6NGU7 62 aa11.28□□□□□ -0.6
CLN3-217ENST00000565354 SMR3BP02814 79 aaPredicted RBP11.28□□□□□ -0.6
CLN3-217ENST00000565354 TRGC2P03986 189 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms