RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 VPS13AQ96RL7 3174 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 GCN1Q92616 2671 aaKnown RBP2.15□□□□□ -2.07
LINC00560-201ENST00000564593 TRBV7-1A0A0A6YYK4 115 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 IGHV1-24A0A0C4DH33 117 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 OR4C46A6NHA9 309 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 FAM223BA6NKX1 122 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 ODF3BA8MYP8 253 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 H3BUA1 57 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 SYS1-DBNDD2H3BUS1 97 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 I3L2K1 104 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 DLEU1O43261 78 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 SLC25A20O43772 301 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 SPINK4O60575 86 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 HBDP02042 147 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 CRYGDP07320 174 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 ZNF25P17030 456 aaPredicted RBP2.15□□□□□ -2.07
LINC00560-201ENST00000564593 CRYBA4P53673 196 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 GNG5P63218 68 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 KRTAP5-7Q6L8G8 165 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 EBLN2Q6P2I7 272 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 PATE2Q6UY27 113 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 GTF2H5Q6ZYL4 71 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 SCXQ7RTU7 201 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 FAM223AQ8IWN6 122 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 TTC9CQ8N5M4 171 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 LENEPQ9Y5L5 61 aa2.15□□□□□ -2.07
LINC00560-201ENST00000564593 ABCA1O95477 2261 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 TRAV5A0A0B4J249 113 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 OR2T8A6NH00 312 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 FABP5P3A8MUU1 101 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 LY6LH3BQJ8 138 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 K7EIM0 57 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 CKS2P33552 79 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 EFNA4P52798 201 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 LGALS9BQ3B8N2 356 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 SPRNQ5BIV9 151 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 TMEM78Q5T7P6 136 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 LYRM7Q5U5X0 104 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 LGALS9CQ6DKI2 356 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 VMO1Q7Z5L0 202 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 OR4X2Q8NGF9 303 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 PRELID3AQ96N28 172 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 CFAP47Q6ZTR5 3102 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 PTPN13Q12923 2485 aa2.14□□□□□ -2.07
LINC00560-201ENST00000564593 ZFHX2Q9C0A1 2572 aaPredicted RBP2.13□□□□□ -2.07
LINC00560-201ENST00000564593 C7orf71A4D174 169 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 K7ERU9 68 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 HLA-DRB4P13762 266 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 SLC25A16P16260 332 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 PLNP26678 52 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 HSD52Q0P140 79 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 PMAIP1Q13794 54 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 KLK9Q2XQG4 91 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 LINC01545Q5VT33 79 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 FAM19A2Q8N3H0 131 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 ZC2HC1AQ96GY0 325 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 USMG5Q96IX5 58 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 SIGMAR1Q99720 223 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 CNFNQ9BYD5 112 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 KLK9Q9UKQ9 250 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 HILPDAQ9Y5L2 63 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 HLA-DRB4X5D2U9 266 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 DSPP15924 2871 aaKnown RBP2.13□□□□□ -2.07
LINC00560-201ENST00000564593 HIVEP3Q5T1R4 2406 aa2.13□□□□□ -2.07
LINC00560-201ENST00000564593 C2orf70A6NJV1 201 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 D6R8Y8 96 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 E7EUB6 86 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 C3orf84H3BNL1 204 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 J3QR89 54 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 OVOL1O14753 267 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 ZNF73O43830 326 aaPredicted RBP2.12□□□□□ -2.07
LINC00560-201ENST00000564593 NUPR1O60356 82 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 ARMS2P0C7Q2 107 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 COX8AP10176 69 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 RHOGP84095 191 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 DIAPH2-AS1Q14236 149 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 UNQ5815/PRO19632Q6UWF5 114 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 KRTAP13-1Q8IUC0 172 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 EXOC3-AS1Q8N2X6 119 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 DEFB125Q8N687 156 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 TEX29Q8N6K0 151 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 Q8N6K4 173 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 OR5A1Q8NGJ0 315 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 LINC00527Q9UJ94 153 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 SPTBN2O15020 2390 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 FAM208BQ5VWN6 2430 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 COL6A6A6NMZ7 2263 aa2.12□□□□□ -2.07
LINC00560-201ENST00000564593 DOPEY1Q5JWR5 2465 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.11□□□□□ -2.07
LINC00560-201ENST00000564593 TRAV8-1A0A0A6YYK1 113 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 TRAV21A0A0B4J279 112 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 A0A1B0GV72 72 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 NDUFA4O00483 81 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 NPFFO15130 113 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 DPM2O94777 84 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 IGLC6P0CF74 106 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 SMIM17P0DL12 118 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 APELAP0DMC3 54 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 ASIPP42127 132 aa2.11□□□□□ -2.07
LINC00560-201ENST00000564593 HINT1P49773 126 aaPredicted RBP2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms