RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 KIR2DL4Q99706 377 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 PRADC1Q9BSG0 188 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 WFDC10AQ9H1F0 79 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 NOP10Q9NPE3 64 aaKnown RBP3.62□□□□□ -1.83
LDLR-209ENST00000558528 HSPB8Q9UJY1 196 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 KIF25-AS1Q9Y6Z4 181 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 HECTD4Q9Y4D8 3996 aa3.62□□□□□ -1.83
LDLR-209ENST00000558528 TRAV9-2A0A087WT02 112 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 TRBV6-4A0A1B0GX49 114 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 IGHV3-53P01767 116 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 SLPIP03973 132 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 KRTAP10-11P60412 298 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 RPL36AP83881 106 aaKnown RBP3.61□□□□□ -1.83
LDLR-209ENST00000558528 TMEM97Q5BJF2 176 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 DEFB121Q5J5C9 76 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 CFAP126Q5VTH2 177 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 SH2D6Q7Z4S9 175 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 BAALCQ8WXS3 180 aa3.61□□□□□ -1.83
LDLR-209ENST00000558528 TRGV4A0A0C4DH28 118 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 LCE6AA0A183 80 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 LOC389332A0A1B0GUA5 103 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 LINC01546A6NGU7 62 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 I3L3M4 83 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 M0QY20 66 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 SERF1AO75920 110 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 NCR2O95944 276 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 NPYP01303 97 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 LINC00315P59091 139 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 NANOS2P60321 138 aaKnown RBP3.6□□□□□ -1.83
LDLR-209ENST00000558528 RHOHQ15669 191 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 DEFB135Q30KP9 77 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 C2orf66Q6UXQ4 117 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 DAZ4Q86SG3 579 aaKnown RBP3.6□□□□□ -1.83
LDLR-209ENST00000558528 HIST3H2BBQ8N257 126 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 LINC00612Q8N6U2 182 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 DAZ3Q9NR90 486 aaKnown RBP3.6□□□□□ -1.83
LDLR-209ENST00000558528 MRPL16Q9NX20 251 aaKnown RBP3.6□□□□□ -1.83
LDLR-209ENST00000558528 STARD9Q9P2P6 4700 aa3.6□□□□□ -1.83
LDLR-209ENST00000558528 TRBV7-3A0A075B6L6 115 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 TRBV27A0A0K0K1C4 114 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 C20orf202A1L168 122 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 PLAC8L1A1L4L8 177 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 SDHAF1A6NFY7 115 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 SMKR1H3BMG3 65 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 C3orf84H3BNL1 204 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 LEPROTL1O95214 131 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 HBDP02042 147 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 PRB2P02812 416 aaPredicted RBP3.59□□□□□ -1.83
LDLR-209ENST00000558528 ATP5G1P05496 136 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 FABP4P15090 132 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 FCER1GP30273 86 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 IFI27P40305 119 aaPredicted RBP3.59□□□□□ -1.83
LDLR-209ENST00000558528 POLR2KP53803 58 aaKnown RBP3.59□□□□□ -1.83
LDLR-209ENST00000558528 EMP1P54849 157 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 DAD1P61803 113 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 Q8NBF4 154 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 TMEM70Q9BUB7 260 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 SMIM2Q9BVW6 85 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 C11orf68Q9H3H3 251 aaKnown RBP3.59□□□□□ -1.83
LDLR-209ENST00000558528 PRO0255Q9UI72 69 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 HHLA3Q9XRX5 114 aa3.59□□□□□ -1.83
LDLR-209ENST00000558528 TRAV26-2A0A0B4J265 109 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 LOC105371267A0A1B0GV96 52 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 RPL37AP8A6NKH3 93 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 DEFB130BP0DP73 79 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 DEFB130AP0DP74 79 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 PKIAP61925 76 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 PMCHL1Q16048 86 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 IQCJQ1A5X6 159 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 FAM222AQ5U5X8 452 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 Q6ZTI0 123 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 Q8NAQ8 132 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 OR10D4PQ8NGN7 298 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 CHCHD10Q8WYQ3 142 aaPredicted RBP3.58□□□□□ -1.84
LDLR-209ENST00000558528 HIST1H2BLQ99880 126 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 DNAH10Q8IVF4 4471 aa3.58□□□□□ -1.84
LDLR-209ENST00000558528 IGLV2-18A0A075B6J9 118 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 IGHV3-73A0A0B4J1V6 119 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 IGHV1-24A0A0C4DH33 117 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 H3BNG1 76 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 H7C423 109 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 K7EIL1 84 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 PRM2P04554 102 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 SMIM6P0DI80 62 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 CRYBA4P53673 196 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 S100A12P80511 92 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 PRR4Q16378 134 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 TAL2Q16559 108 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 PDZD11Q5EBL8 140 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 ZNRF2Q8NHG8 242 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 TMEM141Q96I45 108 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 TM2D3Q9BRN9 247 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 GTSF1LQ9H1H1 148 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 CYSLTR1Q9Y271 337 aa3.57□□□□□ -1.84
LDLR-209ENST00000558528 HUWE1Q7Z6Z7 4374 aaKnown RBP3.56□□□□□ -1.84
LDLR-209ENST00000558528 A0A087X002 238 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.56□□□□□ -1.84
LDLR-209ENST00000558528 JOSD1Q15040 202 aaPredicted RBP3.56□□□□□ -1.84
LDLR-209ENST00000558528 SPATA12Q7Z6I5 190 aa3.56□□□□□ -1.84
LDLR-209ENST00000558528 SBSPONQ8IVN8 264 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms