RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 MED13LQ71F56 2210 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 AFDNP55196 1824 aaKnown RBP1.05□□□□□ -2.24
SCFD1-221ENST00000556534 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.05□□□□□ -2.243e-7■■■■■ 60.3
SCFD1-221ENST00000556534 MAP1AP78559 2803 aaPredicted RBP1.05□□□□□ -2.24
SCFD1-221ENST00000556534 WNK1Q9H4A3 2382 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 BIRC6Q9NR09 4857 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
SCFD1-221ENST00000556534 ACANP16112 2415 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 LAMA4Q16363 1823 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 IGHV1-24A0A0C4DH33 117 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 IFITM5A6NNB3 132 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 IGLC6P0CF74 106 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 PDE6GP18545 87 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 CCSMST1Q4G0I0 132 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 C10orf111Q8N326 155 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 TCTEX1D1Q8N7M0 179 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 OR8J3Q8NGG0 315 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 AMELYQ99218 206 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 SMIM7Q9BQ49 75 aa1.04□□□□□ -2.24
SCFD1-221ENST00000556534 EPPK1P58107 5090 aaKnown RBP1.04□□□□□ -2.24
SCFD1-221ENST00000556534 URB1O60287 2271 aaKnown RBP1.04□□□□□ -2.24
SCFD1-221ENST00000556534 PNMA8CA0A1B0GUJ8 204 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 A0A1W2PPB8 328 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 A0A1W2PRS3 328 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 KIR3DP1A8MWS1 328 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 SMIM24O75264 130 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 LINC00694P0DN24 101 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 KDELR1P24390 212 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 EFNA4P52798 201 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 SPATA45Q537H7 98 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 OCIAD2Q56VL3 154 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 MAGOHBQ96A72 148 aaKnown RBP1.03□□□□□ -2.24
SCFD1-221ENST00000556534 SLC35B3Q9H1N7 401 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 COPZ2Q9P299 210 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 CD163L1Q9NR16 1453 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 ARFGEF2Q9Y6D5 1785 aa1.03□□□□□ -2.24
SCFD1-221ENST00000556534 FAM236AA0A1B0GUQ0 79 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 FAM236BA0A1B0GV22 79 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 LRRC37AA6NMS7 1700 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 BBIP1A8MTZ0 92 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 IGHV3-30P01768 117 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 TSPAN19P0C672 248 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 IGHV3-30-5P0DP03 117 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 ADCYAP1P18509 176 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 EVI2AP22794 236 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 OR10AC1Q8NH08 325 aa1.02□□□□□ -2.25
SCFD1-221ENST00000556534 LSM2Q9Y333 95 aaKnown RBP1.02□□□□□ -2.25
SCFD1-221ENST00000556534 MUC2Q02817 5179 aa1.01□□□□□ -2.25
SCFD1-221ENST00000556534 NCR3O14931 201 aa1.01□□□□□ -2.25
SCFD1-221ENST00000556534 SULT1C4O75897 302 aa1.01□□□□□ -2.25
SCFD1-221ENST00000556534 IGKCP01834 107 aa1.01□□□□□ -2.25
SCFD1-221ENST00000556534 RPL37AP61513 92 aaKnown RBP1.01□□□□□ -2.25
SCFD1-221ENST00000556534 PLGLB1Q02325 96 aa1.01□□□□□ -2.25
SCFD1-221ENST00000556534 CLLU1Q5K131 121 aa1.01□□□□□ -2.25
SCFD1-221ENST00000556534 SONP18583 2426 aaKnown RBP1□□□□□ -2.25
SCFD1-221ENST00000556534 NFAT5O94916 1531 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 SPTBP11277 2137 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 NUPR2A6NF83 97 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 IGF2P01344 180 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 HMGN1P05114 100 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 FXYD4P59646 89 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 KRTAP5-10Q6L8G5 202 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 IDO2Q6ZQW0 420 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 C3orf62Q6ZUJ4 267 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 TSTD1Q8NFU3 115 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 PHIPQ8WWQ0 1821 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 ARAP2Q8WZ64 1704 aa1□□□□□ -2.25
SCFD1-221ENST00000556534 ASCC3Q8N3C0 2202 aaKnown RBP1□□□□□ -2.25
SCFD1-221ENST00000556534 ANKRD50Q9ULJ7 1429 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 KIAA1109Q2LD37 5005 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 TSC2P49815 1807 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 TRRAPQ9Y4A5 3859 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 M0R129 80 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 M0R2Z0 102 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 NDUFA2O43678 99 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 COX4I1P13073 169 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 IL7P13232 177 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 LYPD5Q6UWN5 251 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 FAM107BQ9H098 131 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 COL7A1Q02388 2944 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 CNTRLQ7Z7A1 2325 aa0.99□□□□□ -2.25
SCFD1-221ENST00000556534 VPS8Q8N3P4 1428 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 RYR2Q92736 4967 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 DDX60Q8IY21 1712 aaKnown RBP0.98□□□□□ -2.25
SCFD1-221ENST00000556534 PRKDCP78527 4128 aaKnown RBP0.98□□□□□ -2.25
SCFD1-221ENST00000556534 TMEM30CPA0ZSE6 113 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 GYPBP06028 91 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 NCS1P62166 190 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 RHOHQ15669 191 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 SLC25A26Q70HW3 274 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 SNX29P2Q8IUI4 249 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 CTAGE3PQ8IX95 158 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 MMGT1Q8N4V1 131 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 TCEAL4Q96EI5 215 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 BOKQ9UMX3 212 aaPredicted RBP0.98□□□□□ -2.25
SCFD1-221ENST00000556534 DUOX1Q9NRD9 1551 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 FOCADQ5VW36 1801 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 LOC285556D6RIA3 1793 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 MYOM3Q5VTT5 1437 aa0.98□□□□□ -2.25
SCFD1-221ENST00000556534 EDC4Q6P2E9 1401 aaKnown RBP0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms