RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 MRPL52Q86TS9 123 aaKnown RBP8.93□□□□□ -0.98
SHMT2-219ENST00000555563 TMEM101Q96IK0 257 aa8.93□□□□□ -0.98
SHMT2-219ENST00000555563 SMIM2Q9BVW6 85 aa8.93□□□□□ -0.98
SHMT2-219ENST00000555563 GAGE12HA6NDE8 117 aa8.92□□□□□ -0.98
SHMT2-219ENST00000555563 PPBPP02775 128 aa8.92□□□□□ -0.98
SHMT2-219ENST00000555563 CHCHD10Q8WYQ3 142 aaPredicted RBP8.92□□□□□ -0.98
SHMT2-219ENST00000555563 PHOX2AO14813 284 aa8.91□□□□□ -0.98
SHMT2-219ENST00000555563 ORMDL3Q8N138 153 aa8.91□□□□□ -0.98
SHMT2-219ENST00000555563 SEC11CQ9BY50 192 aa8.91□□□□□ -0.98
SHMT2-219ENST00000555563 hDV102S1A0JD36 115 aa8.9□□□□□ -0.98
SHMT2-219ENST00000555563 CLRN3Q8NCR9 226 aa8.9□□□□□ -0.98
SHMT2-219ENST00000555563 CDC42SE2Q9NRR3 84 aa8.9□□□□□ -0.98
SHMT2-219ENST00000555563 UBE2D4Q9Y2X8 147 aa8.9□□□□□ -0.98
SHMT2-219ENST00000555563 LINC00959A0A1B0GUT2 108 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 EPM2AB3EWF7 344 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 SMR3BP02814 79 aaPredicted RBP8.89□□□□□ -0.99
SHMT2-219ENST00000555563 Q5VSD8 79 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 TMEM136Q6ZRR5 245 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 ZNF664Q8N3J9 261 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 C15orf56Q8N910 161 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 PRELID3AQ96N28 172 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 IMMP2LQ96T52 175 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 HERC1Q15751 4861 aa8.89□□□□□ -0.99
SHMT2-219ENST00000555563 TCAPO15273 167 aa8.88□□□□□ -0.99
SHMT2-219ENST00000555563 CCL25O15444 150 aa8.88□□□□□ -0.99
SHMT2-219ENST00000555563 XCL1P47992 114 aa8.88□□□□□ -0.99
SHMT2-219ENST00000555563 FOXI1Q12951 378 aa8.88□□□□□ -0.99
SHMT2-219ENST00000555563 RNASE13Q5GAN3 156 aaKnown RBP8.88□□□□□ -0.99
SHMT2-219ENST00000555563 DGAT2L7PQ6IED9 249 aa8.88□□□□□ -0.99
SHMT2-219ENST00000555563 Q6ZUT4 128 aa8.88□□□□□ -0.99
SHMT2-219ENST00000555563 CTDSP1Q9GZU7 261 aa8.88□□□□□ -0.99
SHMT2-219ENST00000555563 CSDC2Q9Y534 153 aaKnown RBP8.88□□□□□ -0.99
SHMT2-219ENST00000555563 CNBPP62633 177 aaKnown RBP8.87□□□□□ -0.99
SHMT2-219ENST00000555563 RPL39P62891 51 aaKnown RBP8.87□□□□□ -0.99
SHMT2-219ENST00000555563 SMAGPQ0VAQ4 97 aa8.87□□□□□ -0.99
SHMT2-219ENST00000555563 SCXQ7RTU7 201 aa8.87□□□□□ -0.99
SHMT2-219ENST00000555563 C9orf163Q8N9P6 203 aa8.87□□□□□ -0.99
SHMT2-219ENST00000555563 TMEM18Q96B42 140 aa8.87□□□□□ -0.99
SHMT2-219ENST00000555563 TIMM21Q9BVV7 248 aa8.87□□□□□ -0.99
SHMT2-219ENST00000555563 A6NJY4 79 aa8.86□□□□□ -0.99
SHMT2-219ENST00000555563 SS18Q15532 418 aa8.86□□□□□ -0.99
SHMT2-219ENST00000555563 HIGD2BQ4VC39 106 aa8.86□□□□□ -0.99
SHMT2-219ENST00000555563 AP5S1Q9NUS5 200 aa8.86□□□□□ -0.99
SHMT2-219ENST00000555563 LAMTOR2Q9Y2Q5 125 aa8.86□□□□□ -0.99
SHMT2-219ENST00000555563 SLPIP03973 132 aa8.85□□□□□ -0.99
SHMT2-219ENST00000555563 C10orf91Q5T1B1 145 aa8.85□□□□□ -0.99
SHMT2-219ENST00000555563 CFAP161Q6P656 301 aa8.85□□□□□ -0.99
SHMT2-219ENST00000555563 CHAC1Q9BUX1 264 aa8.85□□□□□ -0.99
SHMT2-219ENST00000555563 MAP1LC3AQ9H492 121 aa8.85□□□□□ -0.99
SHMT2-219ENST00000555563 CARHSP1Q9Y2V2 147 aaKnown RBP8.85□□□□□ -0.99
SHMT2-219ENST00000555563 TRAV9-1A0A075B6T8 112 aa8.84□□□□□ -0.99
SHMT2-219ENST00000555563 GVQW2A0A096LPI5 108 aaPredicted RBP8.84□□□□□ -0.99
SHMT2-219ENST00000555563 LOC389332A0A1B0GUA5 103 aa8.84□□□□□ -0.99
SHMT2-219ENST00000555563 RAB5AP20339 215 aa8.84□□□□□ -0.99
SHMT2-219ENST00000555563 CD164L2Q6UWJ8 174 aa8.84□□□□□ -0.99
SHMT2-219ENST00000555563 SPANXA1Q9NS26 97 aa8.84□□□□□ -0.99
SHMT2-219ENST00000555563 TRAV13-1A0A0B4J241 112 aa8.83□□□□□ -1
SHMT2-219ENST00000555563 PRSS47A8MTI9 375 aa8.83□□□□□ -1
SHMT2-219ENST00000555563 CIRBP-AS1Q8TBR5 109 aa8.83□□□□□ -1
SHMT2-219ENST00000555563 FAM104AQ969W3 186 aa8.83□□□□□ -1
SHMT2-219ENST00000555563 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.82□□□□□ -1
SHMT2-219ENST00000555563 C1orf196B1AJZ1 125 aa8.82□□□□□ -1
SHMT2-219ENST00000555563 FAM229AH3BQW9 127 aa8.82□□□□□ -1
SHMT2-219ENST00000555563 S100PP25815 95 aa8.82□□□□□ -1
SHMT2-219ENST00000555563 RHEBQ15382 184 aa8.82□□□□□ -1
SHMT2-219ENST00000555563 SDIM1Q6ZPB5 146 aa8.82□□□□□ -1
SHMT2-219ENST00000555563 OPRPNQ99935 248 aaPredicted RBP8.82□□□□□ -1
SHMT2-219ENST00000555563 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.82□□□□□ -1
SHMT2-219ENST00000555563 IGHV3-64A0A075B6Q5 118 aa8.81□□□□□ -1
SHMT2-219ENST00000555563 IGHV1-58A0A0C4DH39 117 aa8.81□□□□□ -1
SHMT2-219ENST00000555563 PANO1I0J062 215 aa8.81□□□□□ -1
SHMT2-219ENST00000555563 MRPS36P82909 103 aaKnown RBP8.81□□□□□ -1
SHMT2-219ENST00000555563 KIAA1644Q3SXP7 199 aa8.81□□□□□ -1
SHMT2-219ENST00000555563 LINC00528Q8N1L1 170 aa8.81□□□□□ -1
SHMT2-219ENST00000555563 Q8N8P6 123 aa8.81□□□□□ -1
SHMT2-219ENST00000555563 RPS10P5Q9NQ39 176 aa8.8□□□□□ -1
SHMT2-219ENST00000555563 COX7A2LO14548 114 aa8.79□□□□□ -1
SHMT2-219ENST00000555563 IFI27P40305 119 aaPredicted RBP8.79□□□□□ -1
SHMT2-219ENST00000555563 LINC00526Q96FQ7 95 aa8.79□□□□□ -1
SHMT2-219ENST00000555563 IFITM10A6NMD0 228 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 CHTF8P0CG12 524 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 INAFM2P0DMQ5 153 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 MALP21145 153 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 C2orf66Q6UXQ4 117 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 GNB1LQ9BYB4 327 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 NXT2Q9NPJ8 142 aaKnown RBP8.78□□□□□ -1
SHMT2-219ENST00000555563 CYSLTR1Q9Y271 337 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 PYGO1Q9Y3Y4 419 aa8.78□□□□□ -1
SHMT2-219ENST00000555563 IGLV4-3A0A075B6K6 122 aa8.77□□□□□ -1.01
SHMT2-219ENST00000555563 APOC3P02656 99 aa8.77□□□□□ -1.01
SHMT2-219ENST00000555563 CIRBPQ14011 172 aaKnown RBP8.77□□□□□ -1.01
SHMT2-219ENST00000555563 ORMDL2Q53FV1 153 aa8.77□□□□□ -1.01
SHMT2-219ENST00000555563 C5orf38Q86SI9 138 aa8.77□□□□□ -1.01
SHMT2-219ENST00000555563 K7EMI3 77 aa8.76□□□□□ -1.01
SHMT2-219ENST00000555563 PLA2G1BP04054 148 aaKnown RBP8.76□□□□□ -1.01
SHMT2-219ENST00000555563 SPACA4Q8TDM5 124 aa8.76□□□□□ -1.01
SHMT2-219ENST00000555563 TMEM141Q96I45 108 aa8.76□□□□□ -1.01
SHMT2-219ENST00000555563 ZNF561-AS1K7EIQ3 104 aa8.75□□□□□ -1.01
SHMT2-219ENST00000555563 MT-ND6P03923 174 aa8.75□□□□□ -1.01
SHMT2-219ENST00000555563 COX6A2Q02221 97 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms