RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 Q6Q795 121 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 VSIG2Q96IQ7 327 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 TNFRSF18Q9Y5U5 241 aa3.94□□□□□ -1.78
LIMA1-212ENST00000552491 ZFYVE26Q68DK2 2539 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 IGHV3-38A0A0C4DH36 116 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 H3BMM0 161 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 H3BT86 120 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 C2orf82Q6UX34 121 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 C18orf65Q6ZTR6 163 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 NRGNQ92686 78 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 UBE2WQ96B02 151 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 CCL19Q99731 98 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 LINC00467Q9BRT7 94 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 SS18L2Q9UHA2 77 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 UBE2D4Q9Y2X8 147 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 NOTCH3Q9UM47 2321 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 ATP5J2P56134 94 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 NDUFV3P56181 108 aaKnown RBP3.93□□□□□ -1.78
LIMA1-212ENST00000552491 TTC32Q5I0X7 151 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 HIST2H2BDQ6DRA6 164 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 PRORYQ9H606 182 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 YAE1D1Q9NRH1 226 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 SPANXA1Q9NS26 97 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 MYO9AB2RTY4 2548 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 CENPEQ02224 2701 aa3.93□□□□□ -1.78
LIMA1-212ENST00000552491 FBN2P35556 2912 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 LST1O00453 97 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 TIMM17BO60830 172 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 IFITM1P13164 125 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 HOXD3P31249 432 aaPredicted RBP3.92□□□□□ -1.78
LIMA1-212ENST00000552491 DEFB136Q30KP8 78 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 PIK3CD-AS1Q5SR53 167 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 TMEM61Q8N0U2 210 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 CDKN2A-AS1Q9UH64 79 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 IGSF10Q6WRI0 2623 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 DOPEY1Q5JWR5 2465 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 B5MCH6 92 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 CCDC179H3BU77 68 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 DEFB131AP59861 70 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 COX6A2Q02221 97 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 MRPL23Q16540 153 aaKnown RBP3.92□□□□□ -1.78
LIMA1-212ENST00000552491 C15orf53Q8NAA6 179 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 DUX3Q96PT4 197 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 WNK1Q9H4A3 2382 aa3.92□□□□□ -1.78
LIMA1-212ENST00000552491 B4DSR2 109 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 DEFB121Q5J5C9 76 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 MAPK1IP1LQ8NDC0 245 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 CITED2Q99967 270 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-212ENST00000552491 ANKRD17O75179 2603 aaKnown RBP3.91□□□□□ -1.78
LIMA1-212ENST00000552491 FAM240AA0A1B0GVK7 77 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE12JA6NER3 117 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 A8MTW9 85 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE7O76087 117 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 NDUFA7O95182 113 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE12FP0CL80 117 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE12GP0CL81 117 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE12IP0CL82 117 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 SLURP1P55000 103 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 TIRAPP58753 221 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 GAGE4Q13068 117 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 DNAJC30Q96LL9 226 aa3.91□□□□□ -1.78
LIMA1-212ENST00000552491 IGLV5-45A0A087WSX0 123 aa3.9□□□□□ -1.78
LIMA1-212ENST00000552491 A0A0U1RRA0 63 aa3.9□□□□□ -1.78
LIMA1-212ENST00000552491 SOSTDC1Q6X4U4 206 aa3.9□□□□□ -1.78
LIMA1-212ENST00000552491 C11orf72Q8NBR9 251 aa3.9□□□□□ -1.78
LIMA1-212ENST00000552491 ZNF625Q96I27 306 aaPredicted RBP3.9□□□□□ -1.78
LIMA1-212ENST00000552491 TMEM101Q96IK0 257 aa3.9□□□□□ -1.78
LIMA1-212ENST00000552491 TEX15Q9BXT5 2789 aa3.9□□□□□ -1.78
LIMA1-212ENST00000552491 IGHV3OR16-12A0A075B7B8 117 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 NDUFA1O15239 70 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 IGHV3-53P01767 116 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 LINC00694P0DN24 101 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 ZNF415Q09FC8 603 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 CIRBPQ14011 172 aaKnown RBP3.9□□□□□ -1.79
LIMA1-212ENST00000552491 Q8N2B8 174 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 UBE2E2Q96LR5 201 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 ZNF702PQ9H963 129 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 TLN2Q9Y4G6 2542 aa3.9□□□□□ -1.79
LIMA1-212ENST00000552491 BEAN1Q3B7T3 259 aa3.89□□□□□ -1.79
LIMA1-212ENST00000552491 MYO18BQ8IUG5 2567 aa3.89□□□□□ -1.79
LIMA1-212ENST00000552491 LINC00308Q8TCZ7 52 aa3.89□□□□□ -1.79
LIMA1-212ENST00000552491 Q9H8V8 135 aa3.89□□□□□ -1.79
LIMA1-212ENST00000552491 NIPBLQ6KC79 2804 aaeCLIP3.89□□□□□ -1.79
LIMA1-212ENST00000552491 JMJD1CQ15652 2540 aa3.89□□□□□ -1.79
LIMA1-212ENST00000552491 A0A096LNT2 108 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 IGLV5-39A0A0G2JS06 123 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 HERVK_113P63121 156 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 LINC00242Q5T6M2 205 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 DGAT2L7PQ6IED9 249 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 LINC01587Q99440 93 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 PTPN13Q12923 2485 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 NF1P21359 2839 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 KRTAP9-7A8MTY7 169 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 RS1O15537 224 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 ACYP1P07311 99 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 FAM19A3Q7Z5A8 133 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 COPS9Q8WXC6 57 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 MAP6D1Q9H9H5 199 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 C22orf24Q9Y442 160 aa3.88□□□□□ -1.79
LIMA1-212ENST00000552491 TRBV7-7A0A0K0K1E9 115 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms