RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 A0A1B0GUT8 65 aa10.95□□□□□ -0.66
CHMP1A-205ENST00000548650 C9JQL5 133 aa10.95□□□□□ -0.66
CHMP1A-205ENST00000548650 TSKUQ8WUA8 353 aa10.95□□□□□ -0.66
CHMP1A-205ENST00000548650 MRAP2Q96G30 205 aa10.95□□□□□ -0.66
CHMP1A-205ENST00000548650 BTF3L4Q96K17 158 aa10.95□□□□□ -0.66
CHMP1A-205ENST00000548650 ST20Q9HBF5 79 aa10.95□□□□□ -0.66
CHMP1A-205ENST00000548650 A0A096LNI7 61 aa10.94□□□□□ -0.66
CHMP1A-205ENST00000548650 LINC00959A0A1B0GUT2 108 aa10.94□□□□□ -0.66
CHMP1A-205ENST00000548650 CCL25O15444 150 aa10.94□□□□□ -0.66
CHMP1A-205ENST00000548650 MAJINQ3KP22 176 aa10.94□□□□□ -0.66
CHMP1A-205ENST00000548650 MRPL52Q86TS9 123 aaKnown RBP10.94□□□□□ -0.66
CHMP1A-205ENST00000548650 C7orf33Q8WU49 177 aa10.94□□□□□ -0.66
CHMP1A-205ENST00000548650 TMEM101Q96IK0 257 aa10.94□□□□□ -0.66
CHMP1A-205ENST00000548650 TRBV27A0A0K0K1C4 114 aa10.93□□□□□ -0.66
CHMP1A-205ENST00000548650 POLR2KP53803 58 aaKnown RBP10.93□□□□□ -0.66
CHMP1A-205ENST00000548650 PEA15Q15121 130 aa10.93□□□□□ -0.66
CHMP1A-205ENST00000548650 OSTCQ9NRP0 149 aa10.93□□□□□ -0.66
CHMP1A-205ENST00000548650 IGHV1-58A0A0C4DH39 117 aa10.92□□□□□ -0.66
CHMP1A-205ENST00000548650 RAB4AP20338 218 aa10.92□□□□□ -0.66
CHMP1A-205ENST00000548650 PRR3P79522 188 aaKnown RBP10.92□□□□□ -0.66
CHMP1A-205ENST00000548650 TMEM241Q24JQ0 296 aa10.92□□□□□ -0.66
CHMP1A-205ENST00000548650 AMN1Q8IY45 258 aa10.92□□□□□ -0.66
CHMP1A-205ENST00000548650 STPG4Q8N801 248 aa10.92□□□□□ -0.66
CHMP1A-205ENST00000548650 TNXBP22105 4242 aa10.92□□□□□ -0.66
CHMP1A-205ENST00000548650 C7orf77A4D0Y5 90 aa10.91□□□□□ -0.66
CHMP1A-205ENST00000548650 FAM74A3Q4VXF1 159 aa10.91□□□□□ -0.66
CHMP1A-205ENST00000548650 LINC00526Q96FQ7 95 aa10.91□□□□□ -0.66
CHMP1A-205ENST00000548650 CDC42SE2Q9NRR3 84 aa10.91□□□□□ -0.66
CHMP1A-205ENST00000548650 V9GYV3 84 aa10.91□□□□□ -0.66
CHMP1A-205ENST00000548650 RPL23P62829 140 aaKnown RBP10.9□□□□□ -0.66
CHMP1A-205ENST00000548650 CARD19Q96LW7 228 aa10.9□□□□□ -0.66
CHMP1A-205ENST00000548650 SMKR1H3BMG3 65 aa10.89□□□□□ -0.67
CHMP1A-205ENST00000548650 ADIRFQ15847 76 aa10.89□□□□□ -0.67
CHMP1A-205ENST00000548650 CD164L2Q6UWJ8 174 aa10.89□□□□□ -0.67
CHMP1A-205ENST00000548650 ZNF664Q8N3J9 261 aa10.89□□□□□ -0.67
CHMP1A-205ENST00000548650 NRACQ8N912 160 aa10.89□□□□□ -0.67
CHMP1A-205ENST00000548650 ISOC2Q96AB3 205 aa10.89□□□□□ -0.67
CHMP1A-205ENST00000548650 NAT8Q9UHE5 227 aa10.89□□□□□ -0.67
CHMP1A-205ENST00000548650 RAB14P61106 215 aa10.88□□□□□ -0.67
CHMP1A-205ENST00000548650 SS18Q15532 418 aa10.88□□□□□ -0.67
CHMP1A-205ENST00000548650 NUP35Q8NFH5 326 aa10.88□□□□□ -0.67
CHMP1A-205ENST00000548650 SMDT1Q9H4I9 107 aa10.88□□□□□ -0.67
CHMP1A-205ENST00000548650 PKIGQ9Y2B9 76 aa10.88□□□□□ -0.67
CHMP1A-205ENST00000548650 LINC00474Q9P2X8 69 aa10.87□□□□□ -0.67
CHMP1A-205ENST00000548650 SUMO2P61956 95 aaKnown RBP10.86□□□□□ -0.67
CHMP1A-205ENST00000548650 RIGQ13278 110 aa10.86□□□□□ -0.67
CHMP1A-205ENST00000548650 UBE2D4Q9Y2X8 147 aa10.86□□□□□ -0.67
CHMP1A-205ENST00000548650 VCYO14598 125 aa10.85□□□□□ -0.67
CHMP1A-205ENST00000548650 FCER1GP30273 86 aa10.85□□□□□ -0.67
CHMP1A-205ENST00000548650 CAMPP49913 170 aa10.85□□□□□ -0.67
CHMP1A-205ENST00000548650 SYCNQ0VAF6 134 aa10.85□□□□□ -0.67
CHMP1A-205ENST00000548650 CSDC2Q9Y534 153 aaKnown RBP10.85□□□□□ -0.67
CHMP1A-205ENST00000548650 ZNF561-AS1K7EIQ3 104 aa10.84□□□□□ -0.67
CHMP1A-205ENST00000548650 RNASE13Q5GAN3 156 aaKnown RBP10.84□□□□□ -0.67
CHMP1A-205ENST00000548650 NAT8BQ9UHF3 227 aa10.84□□□□□ -0.67
CHMP1A-205ENST00000548650 PPP1R17O96001 155 aa10.83□□□□□ -0.68
CHMP1A-205ENST00000548650 Q6ZUT4 128 aa10.83□□□□□ -0.68
CHMP1A-205ENST00000548650 LINC01600Q96MT4 127 aa10.83□□□□□ -0.68
CHMP1A-205ENST00000548650 IGLV4-69A0A075B6H9 119 aa10.82□□□□□ -0.68
CHMP1A-205ENST00000548650 C1orf196B1AJZ1 125 aa10.82□□□□□ -0.68
CHMP1A-205ENST00000548650 COX7A2LO14548 114 aa10.82□□□□□ -0.68
CHMP1A-205ENST00000548650 PTTG1IPP53801 180 aa10.82□□□□□ -0.68
CHMP1A-205ENST00000548650 MRPL51Q4U2R6 128 aaKnown RBP10.82□□□□□ -0.68
CHMP1A-205ENST00000548650 FAM104BQ5XKR9 115 aa10.82□□□□□ -0.68
CHMP1A-205ENST00000548650 KIR2DL4Q99706 377 aa10.82□□□□□ -0.68
CHMP1A-205ENST00000548650 PPP1R2P9O14990 202 aa10.81□□□□□ -0.68
CHMP1A-205ENST00000548650 MALP21145 153 aa10.81□□□□□ -0.68
CHMP1A-205ENST00000548650 IFITM2Q01629 132 aa10.81□□□□□ -0.68
CHMP1A-205ENST00000548650 CLLU1Q5K131 121 aa10.81□□□□□ -0.68
CHMP1A-205ENST00000548650 SMIM27A0A1W2PRY6 76 aa10.8□□□□□ -0.68
CHMP1A-205ENST00000548650 SMAGPQ0VAQ4 97 aa10.8□□□□□ -0.68
CHMP1A-205ENST00000548650 TRAV13-1A0A0B4J241 112 aa10.79□□□□□ -0.68
CHMP1A-205ENST00000548650 LOC107984640A0A0U1RRK4 108 aa10.79□□□□□ -0.68
CHMP1A-205ENST00000548650 TIMM21Q9BVV7 248 aa10.79□□□□□ -0.68
CHMP1A-205ENST00000548650 RPL32P62910 135 aaKnown RBP10.78□□□□□ -0.68
CHMP1A-205ENST00000548650 SPINK6Q6UWN8 80 aa10.78□□□□□ -0.68
CHMP1A-205ENST00000548650 CAMK2N2Q96S95 79 aa10.78□□□□□ -0.68
CHMP1A-205ENST00000548650 C20orf78Q9BR46 151 aa10.78□□□□□ -0.68
CHMP1A-205ENST00000548650 TRBV24-1A0A075B6N3 115 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 A0A0J9YXV3 536 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 LINC00862A6NCI5 91 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 APOMO95445 188 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 GAGE2BQ13066 116 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 ODF1Q14990 250 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 Q6ZRP5 223 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 C5orf38Q86SI9 138 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 FAM104AQ969W3 186 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 C2orf48Q96LS8 159 aa10.77□□□□□ -0.69
CHMP1A-205ENST00000548650 LRP2P98164 4655 aa10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 A0A1B0GW15 77 aa10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 RPL39P62891 51 aaKnown RBP10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 SPAG11BQ08648 103 aa10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 SRSF9Q13242 221 aaKnown RBP eCLIP10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 TMEM18Q96B42 140 aa10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 SMIM2Q9BVW6 85 aa10.76□□□□□ -0.69
CHMP1A-205ENST00000548650 A0A1W2PNN7 141 aa10.75□□□□□ -0.69
CHMP1A-205ENST00000548650 TNFRSF6BO95407 300 aa10.75□□□□□ -0.69
CHMP1A-205ENST00000548650 CKS2P33552 79 aa10.75□□□□□ -0.69
CHMP1A-205ENST00000548650 A0A1B0GXF2 115 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms