RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C11orf21Q9P2W6 132 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 PYGO1Q9Y3Y4 419 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 NF1P21359 2839 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 TRAV21A0A0B4J279 112 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 PRYO14603 147 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 AVPP01185 164 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 CCL3L1P16619 93 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 RNASE4P34096 147 aaKnown RBP3.9□□□□□ -1.79
USP28-213ENST00000544967 MIAQ16674 131 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 LCE2DQ5TA82 110 aaPredicted RBP3.9□□□□□ -1.79
USP28-213ENST00000544967 MINOS1Q5TGZ0 78 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 DPH3Q96FX2 82 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 FAM19A4Q96LR4 140 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 ZNRD1Q9P1U0 126 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 KIF25-AS1Q9Y6Z4 181 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 MINOS1-NBL1R4GNA1 71 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 U3KQE9 123 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 FLNAP21333 2647 aaKnown RBP3.9□□□□□ -1.79
USP28-213ENST00000544967 PSMB8P28062 276 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q1RN00 199 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q6JHZ5 121 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 ZANQ9Y493 2812 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 BUB3O43684 328 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 NDUFC2O95298 119 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 RPL18AQ02543 176 aaKnown RBP3.89□□□□□ -1.79
USP28-213ENST00000544967 TMEM61Q8N0U2 210 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 SERP2Q8N6R1 65 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 UPK3BQ9BT76 320 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 LINC00527Q9UJ94 153 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 TRAV26-2A0A0B4J265 109 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 GYPEP15421 78 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q6YL49 198 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q8N6K4 173 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 C3orf56Q8N813 242 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 TIMM21Q9BVV7 248 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 TNCP24821 2201 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 MXRA5Q9NR99 2828 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 COX7A2LO14548 114 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 AKAP6Q13023 2319 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 CTSGP08311 255 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 LINC00315P59091 139 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 C16orf95Q9H693 158 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 IGHV3-21A0A0B4J1V1 117 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 RNASE1P07998 156 aaKnown RBP3.87□□□□□ -1.79
USP28-213ENST00000544967 MRPS36P82909 103 aaKnown RBP3.87□□□□□ -1.79
USP28-213ENST00000544967 ATP5EP2Q5VTU8 51 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 SFTA2Q6UW10 78 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 VMO1Q7Z5L0 202 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 C14orf178Q8N769 122 aaPredicted RBP3.87□□□□□ -1.79
USP28-213ENST00000544967 SPATA3Q8NHX4 192 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 TRBV7-1A0A0A6YYK4 115 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 IGHV1-58A0A0C4DH39 117 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 I3L3M4 83 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 BEAN1Q3B7T3 259 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 Q5XG85 94 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 MED13LQ71F56 2210 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 MALRD1Q5VYJ5 2156 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 POLQO75417 2590 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 PRAC2D3DTV9 90 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 PMAIP1Q13794 54 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 SMCR5Q8TEV8 140 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 RPL39LQ96EH5 51 aaKnown RBP3.86□□□□□ -1.79
USP28-213ENST00000544967 SMR3AQ99954 134 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 PHLDA3Q9Y5J5 127 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 MAP1AP78559 2803 aaPredicted RBP3.86□□□□□ -1.79
USP28-213ENST00000544967 RNF182Q8N6D2 247 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 ZFAND2AQ8N6M9 145 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 OBSCN-AS1Q96MR7 158 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 APOC4P55056 127 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 CEMP1Q6PRD7 247 aaPredicted RBP3.86□□□□□ -1.79
USP28-213ENST00000544967 PRIMA1Q86XR5 153 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 EEF1AKMT3Q96AZ1 226 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 KLK15Q9H2R5 256 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 TRBV10-3A0A0K0K1G6 114 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 A6NDX4 124 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 IGHV4-38-2P0DP08 117 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 S100A7L2Q5SY68 101 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 LINC00482Q8N8I6 264 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 C20orf203Q8NBC4 194 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 MDFIQ99750 246 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 JPT2Q9H910 190 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 FAM19A3Q7Z5A8 133 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 VSIG2Q96IQ7 327 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 IGLV5-45A0A087WSX0 123 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 CLPSL1A2RUU4 121 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 INAFM1C9JVW0 142 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 NDUFA1O15239 70 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 IGHV3-30-3P0DP02 117 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 RNASE3P12724 160 aaKnown RBP3.85□□□□□ -1.79
USP28-213ENST00000544967 DPM3Q9P2X0 92 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 PIK3CD-AS1Q5SR53 167 aa3.84□□□□□ -1.79
USP28-213ENST00000544967 ESM1Q9NQ30 184 aa3.84□□□□□ -1.79
USP28-213ENST00000544967 IGLV4-3A0A075B6K6 122 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 IGHV3-72A0A0B4J1Y9 119 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 TRAV13-1A0A0B4J241 112 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 S100A4P26447 101 aaKnown RBP3.84□□□□□ -1.8
USP28-213ENST00000544967 SUMO4Q6EEV6 95 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 SERP1Q9Y6X1 66 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 IGHV3OR16-10A0A075B7F0 116 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 SOCS3O14543 225 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms