RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 K7ERS5 55 aa13.45□□□□□ -0.26
SFSWAP-203ENST00000535236 SPINK6Q6UWN8 80 aa13.45□□□□□ -0.26
SFSWAP-203ENST00000535236 RNASE8Q8TDE3 154 aaKnown RBP13.45□□□□□ -0.26
SFSWAP-203ENST00000535236 OTOGLQ3ZCN5 2332 aa13.44□□□□□ -0.26
SFSWAP-203ENST00000535236 CCKP06307 115 aa13.44□□□□□ -0.26
SFSWAP-203ENST00000535236 C3orf22Q8N5N4 141 aa13.44□□□□□ -0.26
SFSWAP-203ENST00000535236 TEX49A0A1B0GTD5 131 aa13.44□□□□□ -0.26
SFSWAP-203ENST00000535236 LELP1Q5T871 98 aa13.44□□□□□ -0.26
SFSWAP-203ENST00000535236 C2orf16Q68DN1 1984 aa13.43□□□□□ -0.26
SFSWAP-203ENST00000535236 IGLV4-69A0A075B6H9 119 aa13.43□□□□□ -0.26
SFSWAP-203ENST00000535236 ATP5EP2Q5VTU8 51 aa13.43□□□□□ -0.26
SFSWAP-203ENST00000535236 ENHOQ6UWT2 76 aa13.43□□□□□ -0.26
SFSWAP-203ENST00000535236 WFDC10AQ9H1F0 79 aa13.43□□□□□ -0.26
SFSWAP-203ENST00000535236 COL4A3Q01955 1670 aa13.43□□□□□ -0.26
SFSWAP-203ENST00000535236 CRIP1P50238 77 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 C20orf197Q8N268 126 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 C18orf65Q6ZTR6 163 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 CLUHP3Q96NS8 147 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 SPG11Q96JI7 2443 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 DENND4AQ7Z401 1863 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 LOC107984640A0A0U1RRK4 108 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 M0R378 163 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 DHRS4-AS1Q9P1J3 65 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 PYGO1Q9Y3Y4 419 aa13.42□□□□□ -0.26
SFSWAP-203ENST00000535236 ZNF295-AS1Q8N0V1 137 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 LINC00526Q96FQ7 95 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 WNK1Q9H4A3 2382 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 HRCT1Q6UXD1 115 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 SPTSSBQ8NFR3 76 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 BRK1Q8WUW1 75 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 MBD6Q96DN6 1003 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 RNF185Q96GF1 192 aa13.41□□□□□ -0.26
SFSWAP-203ENST00000535236 TRBV27A0A0K0K1C4 114 aa13.4□□□□□ -0.26
SFSWAP-203ENST00000535236 C3orf84H3BNL1 204 aa13.4□□□□□ -0.26
SFSWAP-203ENST00000535236 ANKHD1Q8IWZ3 2542 aaKnown RBP13.4□□□□□ -0.26
SFSWAP-203ENST00000535236 LOC100131303A0A0U1RQF7 123 aa13.4□□□□□ -0.26
SFSWAP-203ENST00000535236 UBE2D3P61077 147 aa13.4□□□□□ -0.26
SFSWAP-203ENST00000535236 CUL9Q8IWT3 2517 aa13.4□□□□□ -0.26
SFSWAP-203ENST00000535236 TRIAP1O43715 76 aa13.39□□□□□ -0.27
SFSWAP-203ENST00000535236 TRBV6-5A0A0K0K1A5 114 aa13.39□□□□□ -0.27
SFSWAP-203ENST00000535236 Q8N6K4 173 aa13.38□□□□□ -0.27
SFSWAP-203ENST00000535236 TTC28Q96AY4 2481 aa13.38□□□□□ -0.27
SFSWAP-203ENST00000535236 NCOA6Q14686 2063 aaPredicted RBP13.38□□□□□ -0.27
SFSWAP-203ENST00000535236 U3KQK5 164 aa13.38□□□□□ -0.27
SFSWAP-203ENST00000535236 LINC00959A0A1B0GUT2 108 aa13.38□□□□□ -0.27
SFSWAP-203ENST00000535236 TSHBP01222 138 aa13.38□□□□□ -0.27
SFSWAP-203ENST00000535236 CSPG4Q6UVK1 2322 aa13.37□□□□□ -0.27
SFSWAP-203ENST00000535236 CRIP3Q6Q6R5 217 aa13.37□□□□□ -0.27
SFSWAP-203ENST00000535236 TRBV30A0A0K0K1B3 111 aa13.37□□□□□ -0.27
SFSWAP-203ENST00000535236 NANOS2P60321 138 aaKnown RBP13.37□□□□□ -0.27
SFSWAP-203ENST00000535236 FREM1Q5H8C1 2179 aa13.37□□□□□ -0.27
SFSWAP-203ENST00000535236 A0A0J9YWU9 116 aa13.36□□□□□ -0.27
SFSWAP-203ENST00000535236 MAPKAPK5-AS1Q8N8E1 139 aa13.36□□□□□ -0.27
SFSWAP-203ENST00000535236 PRO3102Q9H379 93 aa13.36□□□□□ -0.27
SFSWAP-203ENST00000535236 DSCAML1Q8TD84 2053 aa13.36□□□□□ -0.27
SFSWAP-203ENST00000535236 A8MZ25 164 aa13.36□□□□□ -0.27
SFSWAP-203ENST00000535236 RNASE3P12724 160 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-203ENST00000535236 RPL37AP8A6NKH3 93 aa13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 MPLKIPQ8TAP9 179 aa13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 LINC00474Q9P2X8 69 aa13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 SONP18583 2426 aaKnown RBP13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 PLAC8L1A1L4L8 177 aa13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 IGLV1-40P01703 118 aa13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 PLA2G2AP14555 144 aa13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 Q6ZQY7 126 aa13.35□□□□□ -0.27
SFSWAP-203ENST00000535236 TIMM17BO60830 172 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 PRR15LQ9BU68 103 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 IGLV9-49A0A0B4J1Y8 123 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 FAM236DA0A1B0GTK5 79 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 FAM236CP0DP71 79 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 OXLD1Q5BKU9 147 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 PTPN13Q12923 2485 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 Q6ZS46 218 aa13.34□□□□□ -0.27
SFSWAP-203ENST00000535236 KLLNB2CW77 178 aa13.33□□□□□ -0.28
SFSWAP-203ENST00000535236 MRGPRG-AS1Q2M3A8 158 aa13.33□□□□□ -0.28
SFSWAP-203ENST00000535236 WFDC13Q8IUB5 93 aa13.33□□□□□ -0.28
SFSWAP-203ENST00000535236 ZNF106Q9H2Y7 1883 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-203ENST00000535236 PRR9Q5T870 116 aa13.32□□□□□ -0.28
SFSWAP-203ENST00000535236 IGLV2-11P01706 119 aa13.32□□□□□ -0.28
SFSWAP-203ENST00000535236 DSCAMO60469 2012 aa13.32□□□□□ -0.28
SFSWAP-203ENST00000535236 IGHV4-30-4P0DP06 118 aa13.32□□□□□ -0.28
SFSWAP-203ENST00000535236 NDUFV3P56181 108 aaKnown RBP13.32□□□□□ -0.28
SFSWAP-203ENST00000535236 UQCRQO14949 82 aa13.32□□□□□ -0.28
SFSWAP-203ENST00000535236 SORL1Q92673 2214 aa13.31□□□□□ -0.28
SFSWAP-203ENST00000535236 MT-ATP8P03928 68 aa13.31□□□□□ -0.28
SFSWAP-203ENST00000535236 MRPS36P82909 103 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-203ENST00000535236 ARHGAP21Q5T5U3 1957 aa13.31□□□□□ -0.28
SFSWAP-203ENST00000535236 PRM2P04554 102 aa13.3□□□□□ -0.28
SFSWAP-203ENST00000535236 UBE2D2P62837 147 aa13.3□□□□□ -0.28
SFSWAP-203ENST00000535236 LTBP2Q14767 1821 aa13.3□□□□□ -0.28
SFSWAP-203ENST00000535236 COX17Q14061 63 aa13.29□□□□□ -0.28
SFSWAP-203ENST00000535236 NRACQ8N912 160 aa13.29□□□□□ -0.28
SFSWAP-203ENST00000535236 NDUFA7O95182 113 aa13.29□□□□□ -0.28
SFSWAP-203ENST00000535236 ZNF73O43830 326 aaPredicted RBP13.28□□□□□ -0.28
SFSWAP-203ENST00000535236 C11orf21Q9P2W6 132 aa13.28□□□□□ -0.28
SFSWAP-203ENST00000535236 NUPR2A6NF83 97 aa13.28□□□□□ -0.28
SFSWAP-203ENST00000535236 TP73-AS1Q9UF72 201 aa13.27□□□□□ -0.28
SFSWAP-203ENST00000535236 PRR14LQ5THK1 2151 aa13.27□□□□□ -0.28
SFSWAP-203ENST00000535236 ALPK3Q96L96 1907 aa13.26□□□□□ -0.29
SFSWAP-203ENST00000535236 SMR3AQ99954 134 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms