RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 C1orf158Q8N1D5 194 aa13.99□□□□□ -0.17
PCF11-203ENST00000530304 NTN5Q8WTR8 489 aaPredicted RBP13.99□□□□□ -0.17
PCF11-203ENST00000530304 LRRK2Q5S007 2527 aa13.99□□□□□ -0.17
PCF11-203ENST00000530304 TIMM17BO60830 172 aa13.99□□□□□ -0.17
PCF11-203ENST00000530304 DAND5Q8N907 189 aa13.99□□□□□ -0.17
PCF11-203ENST00000530304 YAE1D1Q9NRH1 226 aa13.99□□□□□ -0.17
PCF11-203ENST00000530304 TRGV1A0A0A0MS02 117 aa13.98□□□□□ -0.17
PCF11-203ENST00000530304 TRBV10-2A0A0K0K1G8 114 aa13.98□□□□□ -0.17
PCF11-203ENST00000530304 RNF183Q96D59 192 aa13.98□□□□□ -0.17
PCF11-203ENST00000530304 ZNF462Q96JM2 2506 aa13.98□□□□□ -0.17
PCF11-203ENST00000530304 NDUFA1O15239 70 aa13.97□□□□□ -0.17
PCF11-203ENST00000530304 LINC01600Q96MT4 127 aa13.97□□□□□ -0.17
PCF11-203ENST00000530304 NAV2Q8IVL1 2488 aa13.97□□□□□ -0.17
PCF11-203ENST00000530304 LINC00694P0DN24 101 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 IL17DQ8TAD2 202 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 CHD6Q8TD26 2715 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 CUBNO60494 3623 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 ABCA12Q86UK0 2595 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 COX6CP09669 75 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 IFITM1P13164 125 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 C11orf44Q8N8P7 122 aa13.96□□□□□ -0.17
PCF11-203ENST00000530304 LINC00242Q5T6M2 205 aa13.95□□□□□ -0.18
PCF11-203ENST00000530304 BBC3Q96PG8 261 aaPredicted RBP13.95□□□□□ -0.18
PCF11-203ENST00000530304 TEX49A0A1B0GTD5 131 aa13.95□□□□□ -0.18
PCF11-203ENST00000530304 HERVK_113P63121 156 aa13.95□□□□□ -0.18
PCF11-203ENST00000530304 LRRC75A-AS1Q8N1F1 130 aa13.95□□□□□ -0.18
PCF11-203ENST00000530304 ZFYVE26Q68DK2 2539 aa13.95□□□□□ -0.18
PCF11-203ENST00000530304 NDUFA7O95182 113 aa13.94□□□□□ -0.18
PCF11-203ENST00000530304 TRAV25A0A0B4J276 109 aa13.94□□□□□ -0.18
PCF11-203ENST00000530304 A0A1W2PRX2 142 aa13.94□□□□□ -0.18
PCF11-203ENST00000530304 CIRBPQ14011 172 aaKnown RBP13.94□□□□□ -0.18
PCF11-203ENST00000530304 UBR5O95071 2799 aaPredicted RBP13.93□□□□□ -0.18
PCF11-203ENST00000530304 TRAV26-1A0A087WT03 109 aa13.93□□□□□ -0.18
PCF11-203ENST00000530304 IGLV5-39A0A0G2JS06 123 aa13.93□□□□□ -0.18
PCF11-203ENST00000530304 H7C423 109 aa13.93□□□□□ -0.18
PCF11-203ENST00000530304 RPL13AP40429 203 aaKnown RBP13.93□□□□□ -0.18
PCF11-203ENST00000530304 RPL36AP83881 106 aaKnown RBP13.93□□□□□ -0.18
PCF11-203ENST00000530304 Q6ZTI0 123 aa13.93□□□□□ -0.18
PCF11-203ENST00000530304 CLEC2BQ92478 149 aa13.93□□□□□ -0.18
PCF11-203ENST00000530304 RPL36ALQ969Q0 106 aaKnown RBP13.93□□□□□ -0.18
PCF11-203ENST00000530304 Q9H8V8 135 aa13.93□□□□□ -0.18
PCF11-203ENST00000530304 NTM-AS1Q6ZSK4 140 aa13.93□□□□□ -0.18
PCF11-203ENST00000530304 K7EQD1 137 aa13.92□□□□□ -0.18
PCF11-203ENST00000530304 C2orf82Q6UX34 121 aa13.92□□□□□ -0.18
PCF11-203ENST00000530304 TMEM86BQ8N661 226 aa13.92□□□□□ -0.18
PCF11-203ENST00000530304 ZNF625Q96I27 306 aaPredicted RBP13.92□□□□□ -0.18
PCF11-203ENST00000530304 KRTAP1-3Q8IUG1 177 aa13.91□□□□□ -0.18
PCF11-203ENST00000530304 CSDC2Q9Y534 153 aaKnown RBP13.91□□□□□ -0.18
PCF11-203ENST00000530304 TRAV13-1A0A0B4J241 112 aa13.91□□□□□ -0.18
PCF11-203ENST00000530304 TRBV10-1A0A0K0K1A3 114 aa13.91□□□□□ -0.18
PCF11-203ENST00000530304 CCL24O00175 119 aa13.91□□□□□ -0.18
PCF11-203ENST00000530304 DAZ2Q13117 558 aaKnown RBP13.91□□□□□ -0.18
PCF11-203ENST00000530304 FAM19A3Q7Z5A8 133 aa13.91□□□□□ -0.18
PCF11-203ENST00000530304 DAZ4Q86SG3 579 aaKnown RBP13.91□□□□□ -0.18
PCF11-203ENST00000530304 DAZ3Q9NR90 486 aaKnown RBP13.91□□□□□ -0.18
PCF11-203ENST00000530304 WNK1Q9H4A3 2382 aa13.9□□□□□ -0.18
PCF11-203ENST00000530304 LINC00308Q8TCZ7 52 aa13.9□□□□□ -0.18
PCF11-203ENST00000530304 UBE2WQ96B02 151 aa13.9□□□□□ -0.18
PCF11-203ENST00000530304 CITED2Q99967 270 aaPredicted RBP13.9□□□□□ -0.18
PCF11-203ENST00000530304 LST1O00453 97 aa13.9□□□□□ -0.18
PCF11-203ENST00000530304 A0A0U1RRA0 63 aa13.89□□□□□ -0.19
PCF11-203ENST00000530304 DNAJC9-AS1A6NH13 148 aa13.89□□□□□ -0.19
PCF11-203ENST00000530304 SMIM1B2RUZ4 78 aa13.89□□□□□ -0.19
PCF11-203ENST00000530304 TLN2Q9Y4G6 2542 aa13.89□□□□□ -0.19
PCF11-203ENST00000530304 EPG5Q9HCE0 2579 aa13.88□□□□□ -0.19
PCF11-203ENST00000530304 TRAV4A0A0B4J268 109 aa13.88□□□□□ -0.19
PCF11-203ENST00000530304 GAGE12JA6NER3 117 aa13.88□□□□□ -0.19
PCF11-203ENST00000530304 GAGE4Q13068 117 aa13.88□□□□□ -0.19
PCF11-203ENST00000530304 GAGE5Q13069 117 aa13.88□□□□□ -0.19
PCF11-203ENST00000530304 H3BT86 120 aa13.88□□□□□ -0.19
PCF11-203ENST00000530304 CDC42SE2Q9NRR3 84 aa13.88□□□□□ -0.19
PCF11-203ENST00000530304 USP24Q9UPU5 2620 aa13.87□□□□□ -0.19
PCF11-203ENST00000530304 ZNF843Q8N446 348 aa13.87□□□□□ -0.19
PCF11-203ENST00000530304 NOP10Q9NPE3 64 aaKnown RBP13.87□□□□□ -0.19
PCF11-203ENST00000530304 CITED1Q99966 193 aa13.87□□□□□ -0.19
PCF11-203ENST00000530304 TRAV8-4A0A0B4J246 113 aa13.86□□□□□ -0.19
PCF11-203ENST00000530304 TEX29Q8N6K0 151 aa13.86□□□□□ -0.19
PCF11-203ENST00000530304 NF1P21359 2839 aa13.85□□□□□ -0.19
PCF11-203ENST00000530304 NBPF19A0A087WUL8 3843 aa13.85□□□□□ -0.19
PCF11-203ENST00000530304 ESM1Q9NQ30 184 aa13.85□□□□□ -0.19
PCF11-203ENST00000530304 F5H768 121 aa13.84□□□□□ -0.19
PCF11-203ENST00000530304 SOSTDC1Q6X4U4 206 aa13.84□□□□□ -0.19
PCF11-203ENST00000530304 SONP18583 2426 aaKnown RBP13.84□□□□□ -0.19
PCF11-203ENST00000530304 PRIMA1Q86XR5 153 aa13.84□□□□□ -0.19
PCF11-203ENST00000530304 APCP25054 2843 aa13.83□□□□□ -0.19
PCF11-203ENST00000530304 CRLF1O75462 422 aa13.83□□□□□ -0.19
PCF11-203ENST00000530304 SNCGO76070 127 aa13.83□□□□□ -0.19
PCF11-203ENST00000530304 GIG44P09565 113 aaPredicted RBP13.83□□□□□ -0.19
PCF11-203ENST00000530304 MEIG1Q5JSS6 88 aa13.83□□□□□ -0.2
PCF11-203ENST00000530304 UBE2L6O14933 153 aa13.81□□□□□ -0.2
PCF11-203ENST00000530304 WFDC11Q8NEX6 87 aa13.81□□□□□ -0.2
PCF11-203ENST00000530304 COPS9Q8WXC6 57 aa13.81□□□□□ -0.2
PCF11-203ENST00000530304 PLAC8L1A1L4L8 177 aa13.8□□□□□ -0.2
PCF11-203ENST00000530304 TMEM243Q9BU79 118 aa13.8□□□□□ -0.2
PCF11-203ENST00000530304 WFDC10AQ9H1F0 79 aa13.8□□□□□ -0.2
PCF11-203ENST00000530304 ITPR3Q14573 2671 aa13.8□□□□□ -0.2
PCF11-203ENST00000530304 GAGE7O76087 117 aa13.8□□□□□ -0.2
PCF11-203ENST00000530304 GAGE12FP0CL80 117 aa13.8□□□□□ -0.2
PCF11-203ENST00000530304 GAGE12GP0CL81 117 aa13.8□□□□□ -0.2
PCF11-203ENST00000530304 GAGE12IP0CL82 117 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms