RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 KIAA1644Q3SXP7 199 aa8.79□□□□□ -1
VPS28-210ENST00000529182 TMEM101Q96IK0 257 aa8.79□□□□□ -1
VPS28-210ENST00000529182 TRAV8-4A0A0B4J246 113 aa8.78□□□□□ -1
VPS28-210ENST00000529182 KRTAP10-1P60331 282 aa8.78□□□□□ -1
VPS28-210ENST00000529182 MRPL52Q86TS9 123 aaKnown RBP8.78□□□□□ -1
VPS28-210ENST00000529182 SVBPQ8N300 66 aa8.78□□□□□ -1
VPS28-210ENST00000529182 OR5A1Q8NGJ0 315 aa8.78□□□□□ -1
VPS28-210ENST00000529182 UBE2D4Q9Y2X8 147 aa8.78□□□□□ -1
VPS28-210ENST00000529182 USP17L23D6RBM5 183 aa8.77□□□□□ -1.01
VPS28-210ENST00000529182 SNAPINO95295 136 aa8.77□□□□□ -1.01
VPS28-210ENST00000529182 RPL39P62891 51 aaKnown RBP8.77□□□□□ -1.01
VPS28-210ENST00000529182 NTN5Q8WTR8 489 aaPredicted RBP8.77□□□□□ -1.01
VPS28-210ENST00000529182 CDC42SE2Q9NRR3 84 aa8.77□□□□□ -1.01
VPS28-210ENST00000529182 LAMTOR2Q9Y2Q5 125 aa8.77□□□□□ -1.01
VPS28-210ENST00000529182 DNAH8Q96JB1 4490 aa8.77□□□□□ -1.01
VPS28-210ENST00000529182 TGIF2-C20orf24A0A0A6YYL0 155 aa8.76□□□□□ -1.01
VPS28-210ENST00000529182 GAGE12HA6NDE8 117 aa8.76□□□□□ -1.01
VPS28-210ENST00000529182 PRSS47A8MTI9 375 aa8.76□□□□□ -1.01
VPS28-210ENST00000529182 GCSHP23434 173 aa8.76□□□□□ -1.01
VPS28-210ENST00000529182 RNASE13Q5GAN3 156 aaKnown RBP8.76□□□□□ -1.01
VPS28-210ENST00000529182 DGAT2L7PQ6IED9 249 aa8.76□□□□□ -1.01
VPS28-210ENST00000529182 GNB1LQ9BYB4 327 aa8.76□□□□□ -1.01
VPS28-210ENST00000529182 MAP1LC3AQ9H492 121 aa8.76□□□□□ -1.01
VPS28-210ENST00000529182 RAB5AP20339 215 aa8.75□□□□□ -1.01
VPS28-210ENST00000529182 ZNF664Q8N3J9 261 aa8.75□□□□□ -1.01
VPS28-210ENST00000529182 CHCHD10Q8WYQ3 142 aaPredicted RBP8.75□□□□□ -1.01
VPS28-210ENST00000529182 LINC00959A0A1B0GUT2 108 aa8.74□□□□□ -1.01
VPS28-210ENST00000529182 PRSS1P07477 247 aa8.74□□□□□ -1.01
VPS28-210ENST00000529182 S100A1P23297 94 aa8.74□□□□□ -1.01
VPS28-210ENST00000529182 LINC01620Q4KN68 170 aa8.74□□□□□ -1.01
VPS28-210ENST00000529182 Q6ZUT4 128 aa8.74□□□□□ -1.01
VPS28-210ENST00000529182 Q8N8P6 123 aa8.74□□□□□ -1.01
VPS28-210ENST00000529182 TMEM18Q96B42 140 aa8.74□□□□□ -1.01
VPS28-210ENST00000529182 CDK2AP2O75956 126 aa8.73□□□□□ -1.01
VPS28-210ENST00000529182 XCL1P47992 114 aa8.73□□□□□ -1.01
VPS28-210ENST00000529182 FAM104AQ969W3 186 aa8.73□□□□□ -1.01
VPS28-210ENST00000529182 OPRPNQ99935 248 aaPredicted RBP8.73□□□□□ -1.01
VPS28-210ENST00000529182 MRPL18Q9H0U6 180 aaKnown RBP8.73□□□□□ -1.01
VPS28-210ENST00000529182 CSDC2Q9Y534 153 aaKnown RBP8.73□□□□□ -1.01
VPS28-210ENST00000529182 CCL25O15444 150 aa8.72□□□□□ -1.01
VPS28-210ENST00000529182 IFI27P40305 119 aaPredicted RBP8.72□□□□□ -1.01
VPS28-210ENST00000529182 SMAGPQ0VAQ4 97 aa8.72□□□□□ -1.01
VPS28-210ENST00000529182 FABP9Q0Z7S8 132 aa8.72□□□□□ -1.01
VPS28-210ENST00000529182 C14orf177Q52M58 125 aa8.72□□□□□ -1.01
VPS28-210ENST00000529182 TIMM21Q9BVV7 248 aa8.72□□□□□ -1.01
VPS28-210ENST00000529182 MT-ND6P03923 174 aa8.71□□□□□ -1.02
VPS28-210ENST00000529182 FOXI1Q12951 378 aa8.71□□□□□ -1.02
VPS28-210ENST00000529182 COX19Q49B96 90 aa8.71□□□□□ -1.02
VPS28-210ENST00000529182 ALKBH7Q9BT30 221 aaPredicted RBP8.71□□□□□ -1.02
VPS28-210ENST00000529182 TRAV13-1A0A0B4J241 112 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 SCO1O75880 301 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 HAMPP81172 84 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 SS18Q15532 418 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 C15orf56Q8N910 161 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 YPEL4Q96NS1 127 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 KRTAP17-1Q9BYP8 105 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 NXT2Q9NPJ8 142 aaKnown RBP8.7□□□□□ -1.02
VPS28-210ENST00000529182 SPANXA1Q9NS26 97 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 FAM30AQ9NZY2 134 aa8.7□□□□□ -1.02
VPS28-210ENST00000529182 hDV102S1A0JD36 115 aa8.69□□□□□ -1.02
VPS28-210ENST00000529182 XGP55808 180 aa8.69□□□□□ -1.02
VPS28-210ENST00000529182 CBLN2Q8IUK8 224 aa8.69□□□□□ -1.02
VPS28-210ENST00000529182 TRAPPC1Q9Y5R8 145 aa8.69□□□□□ -1.02
VPS28-210ENST00000529182 FAT1Q14517 4588 aa8.69□□□□□ -1.02
VPS28-210ENST00000529182 MRPS36P82909 103 aaKnown RBP8.68□□□□□ -1.02
VPS28-210ENST00000529182 HIGD2BQ4VC39 106 aa8.68□□□□□ -1.02
VPS28-210ENST00000529182 ORMDL2Q53FV1 153 aa8.68□□□□□ -1.02
VPS28-210ENST00000529182 C2orf66Q6UXQ4 117 aa8.68□□□□□ -1.02
VPS28-210ENST00000529182 ABCA13Q86UQ4 5058 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 IGLV4-3A0A075B6K6 122 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 C1orf196B1AJZ1 125 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 SLPIP03973 132 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 CD164L2Q6UWJ8 174 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 PRSS3P2Q8NHM4 247 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 CYSLTR1Q9Y271 337 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 PYGO1Q9Y3Y4 419 aa8.67□□□□□ -1.02
VPS28-210ENST00000529182 IFITM10A6NMD0 228 aa8.66□□□□□ -1.02
VPS28-210ENST00000529182 K7EMI3 77 aa8.66□□□□□ -1.02
VPS28-210ENST00000529182 ZC2HC1BQ5TFG8 222 aa8.65□□□□□ -1.02
VPS28-210ENST00000529182 CFAP161Q6P656 301 aa8.65□□□□□ -1.02
VPS28-210ENST00000529182 SMCO4Q9NRQ5 59 aa8.65□□□□□ -1.02
VPS28-210ENST00000529182 AP5S1Q9NUS5 200 aa8.65□□□□□ -1.02
VPS28-210ENST00000529182 C5orf38Q86SI9 138 aa8.64□□□□□ -1.03
VPS28-210ENST00000529182 LINC00526Q96FQ7 95 aa8.64□□□□□ -1.03
VPS28-210ENST00000529182 TMEM141Q96I45 108 aa8.64□□□□□ -1.03
VPS28-210ENST00000529182 GVQW2A0A096LPI5 108 aaPredicted RBP8.63□□□□□ -1.03
VPS28-210ENST00000529182 IGHV1-58A0A0C4DH39 117 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 LINC01546A6NGU7 62 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 IGIPA6NJ69 53 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 COX7A2LO14548 114 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 CNBPP62633 177 aaKnown RBP8.63□□□□□ -1.03
VPS28-210ENST00000529182 Q6ZSA8 131 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 LINC00173Q6ZV60 143 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 FA2HQ7L5A8 372 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 C9orf163Q8N9P6 203 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 C18orf32Q8TCD1 76 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 TOMM6Q96B49 74 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 KRTAP4-5Q9BYR2 181 aa8.63□□□□□ -1.03
VPS28-210ENST00000529182 SMR3BP02814 79 aaPredicted RBP8.62□□□□□ -1.03
VPS28-210ENST00000529182 MALP21145 153 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms