RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 RPL35AP18077 110 aaKnown RBP10.62□□□□□ -0.71
NUP54-217ENST00000514987 WFDC2Q14508 124 aa10.62□□□□□ -0.71
NUP54-217ENST00000514987 MUSTN1Q8IVN3 82 aa10.62□□□□□ -0.71
NUP54-217ENST00000514987 CSNK1G2-AS1Q8NCQ2 148 aa10.62□□□□□ -0.71
NUP54-217ENST00000514987 RNF183Q96D59 192 aa10.62□□□□□ -0.71
NUP54-217ENST00000514987 PRO0461Q9UI25 63 aa10.62□□□□□ -0.71
NUP54-217ENST00000514987 TLN2Q9Y4G6 2542 aa10.62□□□□□ -0.71
NUP54-217ENST00000514987 TRAV8-3A0A0A6YYJ7 113 aa10.61□□□□□ -0.71
NUP54-217ENST00000514987 TEX48A0A1B0GUV7 120 aa10.61□□□□□ -0.71
NUP54-217ENST00000514987 TRBV6-4A0A1B0GX49 114 aa10.61□□□□□ -0.71
NUP54-217ENST00000514987 PCP4P48539 62 aa10.61□□□□□ -0.71
NUP54-217ENST00000514987 TRGV2A0A075B6R0 118 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 PLAC8L1A1L4L8 177 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 SBSPONQ8IVN8 264 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 ERG28Q9UKR5 140 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 SONP18583 2426 aaKnown RBP10.6□□□□□ -0.71
NUP54-217ENST00000514987 SPINK8P0C7L1 97 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 PSMB2P49721 201 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 TMEM101Q96IK0 257 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 LITAFQ99732 161 aa10.6□□□□□ -0.71
NUP54-217ENST00000514987 PDZD2O15018 2839 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 GAGE12JA6NER3 117 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 NDUFA1O15239 70 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 IGHV3-33P01772 117 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 PF4P02776 101 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 IFITM1P13164 125 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 GAGE4Q13068 117 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 GAGE5Q13069 117 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 MIAQ16674 131 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 ATP6V0E2Q8NHE4 81 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 TMEM243Q9BU79 118 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 CDKN2A-AS1Q9UH64 79 aa10.59□□□□□ -0.71
NUP54-217ENST00000514987 UBE2L6O14933 153 aa10.58□□□□□ -0.72
NUP54-217ENST00000514987 GAGE7O76087 117 aa10.58□□□□□ -0.72
NUP54-217ENST00000514987 GAGE12FP0CL80 117 aa10.58□□□□□ -0.72
NUP54-217ENST00000514987 GAGE12GP0CL81 117 aa10.58□□□□□ -0.72
NUP54-217ENST00000514987 GAGE12IP0CL82 117 aa10.58□□□□□ -0.72
NUP54-217ENST00000514987 CIRBPQ14011 172 aaKnown RBP10.58□□□□□ -0.72
NUP54-217ENST00000514987 NTM-AS1Q6ZSK4 140 aa10.58□□□□□ -0.72
NUP54-217ENST00000514987 WFDC10AQ9H1F0 79 aa10.58□□□□□ -0.72
NUP54-217ENST00000514987 TRGV4A0A0C4DH28 118 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 IGLV5-39A0A0G2JS06 123 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 SCGB1C2P0DMR2 95 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 INSL3P51460 131 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 LINC00242Q5T6M2 205 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 LINC00482Q8N8I6 264 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 COPS9Q8WXC6 57 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 CDC42SE2Q9NRR3 84 aa10.57□□□□□ -0.72
NUP54-217ENST00000514987 WNK1Q9H4A3 2382 aa10.56□□□□□ -0.72
NUP54-217ENST00000514987 PRSS2P07478 247 aa10.56□□□□□ -0.72
NUP54-217ENST00000514987 ETDBQ3ZM63 59 aa10.56□□□□□ -0.72
NUP54-217ENST00000514987 CHD6Q8TD26 2715 aa10.56□□□□□ -0.72
NUP54-217ENST00000514987 CCDC168Q8NDH2 2452 aa10.56□□□□□ -0.72
NUP54-217ENST00000514987 LINC00694P0DN24 101 aa10.56□□□□□ -0.72
NUP54-217ENST00000514987 TENM4Q6N022 2769 aa10.56□□□□□ -0.72
NUP54-217ENST00000514987 LY6G6DO95868 133 aa10.55□□□□□ -0.72
NUP54-217ENST00000514987 TCL1BO95988 128 aa10.55□□□□□ -0.72
NUP54-217ENST00000514987 KIR2DL5BQ8NHK3 375 aa10.55□□□□□ -0.72
NUP54-217ENST00000514987 SMIM9A6NGZ8 99 aa10.54□□□□□ -0.72
NUP54-217ENST00000514987 M0QXV9 152 aa10.54□□□□□ -0.72
NUP54-217ENST00000514987 COX6A2Q02221 97 aa10.54□□□□□ -0.72
NUP54-217ENST00000514987 SH2D6Q7Z4S9 175 aa10.54□□□□□ -0.72
NUP54-217ENST00000514987 TRBV30A0A0K0K1B3 111 aa10.53□□□□□ -0.72
NUP54-217ENST00000514987 ADAMTSL4-AS1Q5T5F5 129 aa10.53□□□□□ -0.72
NUP54-217ENST00000514987 SFTA2Q6UW10 78 aa10.53□□□□□ -0.72
NUP54-217ENST00000514987 EIF4EBP3O60516 100 aaPredicted RBP10.52□□□□□ -0.72
NUP54-217ENST00000514987 KRTAP10-3P60369 221 aa10.52□□□□□ -0.72
NUP54-217ENST00000514987 HERV-K104P63124 156 aa10.52□□□□□ -0.72
NUP54-217ENST00000514987 FHL2Q14192 279 aa10.52□□□□□ -0.72
NUP54-217ENST00000514987 Q1RN00 199 aa10.52□□□□□ -0.72
NUP54-217ENST00000514987 TRAV13-1A0A0B4J241 112 aa10.52□□□□□ -0.73
NUP54-217ENST00000514987 SMIM1B2RUZ4 78 aa10.52□□□□□ -0.73
NUP54-217ENST00000514987 C9orf66Q5T8R8 295 aa10.52□□□□□ -0.73
NUP54-217ENST00000514987 LINC00612Q8N6U2 182 aa10.52□□□□□ -0.73
NUP54-217ENST00000514987 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.52□□□□□ -0.73
NUP54-217ENST00000514987 SMR3AQ99954 134 aa10.52□□□□□ -0.73
NUP54-217ENST00000514987 KMT2BQ9UMN6 2715 aaPredicted RBP10.51□□□□□ -0.73
NUP54-217ENST00000514987 A8MZ25 164 aa10.51□□□□□ -0.73
NUP54-217ENST00000514987 SMCPP49901 116 aaPredicted RBP10.51□□□□□ -0.73
NUP54-217ENST00000514987 ATXN8Q156A1 80 aa10.51□□□□□ -0.73
NUP54-217ENST00000514987 PPDPFQ9H3Y8 114 aa10.51□□□□□ -0.73
NUP54-217ENST00000514987 TRBV6-8A0A0A6YYG3 113 aa10.5□□□□□ -0.73
NUP54-217ENST00000514987 COX6CP09669 75 aa10.5□□□□□ -0.73
NUP54-217ENST00000514987 TEN1Q86WV5 123 aa10.5□□□□□ -0.73
NUP54-217ENST00000514987 MTURNQ8N3F0 131 aa10.5□□□□□ -0.73
NUP54-217ENST00000514987 ZNF469Q96JG9 3925 aaPredicted RBP10.5□□□□□ -0.73
NUP54-217ENST00000514987 FOXI1Q12951 378 aa10.49□□□□□ -0.73
NUP54-217ENST00000514987 Q9H8V8 135 aa10.49□□□□□ -0.73
NUP54-217ENST00000514987 AKAP9Q99996 3911 aa10.48□□□□□ -0.73
NUP54-217ENST00000514987 F5H768 121 aa10.48□□□□□ -0.73
NUP54-217ENST00000514987 H7C2G1 150 aa10.48□□□□□ -0.73
NUP54-217ENST00000514987 PPDPFLQ8WWR9 84 aa10.48□□□□□ -0.73
NUP54-217ENST00000514987 LOC100131303A0A0U1RQF7 123 aa10.48□□□□□ -0.73
NUP54-217ENST00000514987 CRLF1O75462 422 aa10.48□□□□□ -0.73
NUP54-217ENST00000514987 ZNF625Q96I27 306 aaPredicted RBP10.48□□□□□ -0.73
NUP54-217ENST00000514987 LINC01600Q96MT4 127 aa10.48□□□□□ -0.73
NUP54-217ENST00000514987 GAGE12HA6NDE8 117 aa10.47□□□□□ -0.73
NUP54-217ENST00000514987 PRIMA1Q86XR5 153 aa10.47□□□□□ -0.73
NUP54-217ENST00000514987 SPATA25Q9BR10 227 aa10.47□□□□□ -0.73
NUP54-217ENST00000514987 ICOSQ9Y6W8 199 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 1548.5 ms