RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 LSM3P62310 102 aaKnown RBP0.33□□□□□ -2.36
CPSF3-205ENST00000489629 PLGLB1Q02325 96 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 SMIM5Q71RC9 77 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 SNX29P2Q8IUI4 249 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 ATOH7Q8N100 152 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 MAFIPQ8WZ33 124 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 SMIM3Q9BZL3 60 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 C10orf95Q9H7T3 257 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 SPANXA1Q9NS26 97 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 TSC2P49815 1807 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 PLXNA1Q9UIW2 1896 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 LMTK2Q8IWU2 1503 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 DUOX2Q9NRD8 1548 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 LRRC37AA6NMS7 1700 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 MON2Q7Z3U7 1717 aa0.33□□□□□ -2.36
CPSF3-205ENST00000489629 DNAH10Q8IVF4 4471 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 PNMA8CA0A1B0GUJ8 204 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 HIGD1CA8MV81 97 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 SLC25A6P12236 298 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 EVI2AP22794 236 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 SPINK9Q5DT21 86 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 C6orf52Q5T4I8 152 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 DMAC1Q96GE9 116 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 SMR3AQ99954 134 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 FAM103A1Q9BTL3 118 aaKnown RBP0.32□□□□□ -2.36
CPSF3-205ENST00000489629 KRTAP2-1Q9BYU5 128 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 ATG5Q9H1Y0 275 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 MYOM2P54296 1465 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 MAGI2Q86UL8 1455 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 RAPGEF2Q9Y4G8 1499 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 TANC1Q9C0D5 1861 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 ACACAQ13085 2346 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 LY75O60449 1722 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 URB2Q14146 1524 aaKnown RBP0.32□□□□□ -2.36
CPSF3-205ENST00000489629 DNMBPQ6XZF7 1577 aa0.32□□□□□ -2.36
CPSF3-205ENST00000489629 MAP2P11137 1827 aaKnown RBP0.31□□□□□ -2.36
CPSF3-205ENST00000489629 ARFGEF1Q9Y6D6 1849 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 SHROOM2Q13796 1616 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 KIF14Q15058 1648 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 PKDREJQ9NTG1 2253 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 CCDC180Q9P1Z9 1646 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 IFT140Q96RY7 1462 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 PKHD1L1Q86WI1 4243 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 M0R2P5 195 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 FXYD1O00168 92 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 MPC1LP0DKB6 136 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 POLR2JP52435 117 aaKnown RBP0.31□□□□□ -2.36
CPSF3-205ENST00000489629 ZNF137PP52743 207 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 SMIM21Q3B7S5 101 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 MIC13Q5XKP0 118 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 UNQ5815/PRO19632Q6UWF5 114 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 C10orf99Q6UWK7 81 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 Q6ZS92 163 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 ANP32BQ92688 251 aaKnown RBP0.31□□□□□ -2.36
CPSF3-205ENST00000489629 NOP16Q9Y3C1 178 aaKnown RBP0.31□□□□□ -2.36
CPSF3-205ENST00000489629 PRDM15P57071 1507 aaPredicted RBP0.31□□□□□ -2.36
CPSF3-205ENST00000489629 ARHGEF12Q9NZN5 1544 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 HUWE1Q7Z6Z7 4374 aaKnown RBP0.31□□□□□ -2.36
CPSF3-205ENST00000489629 DNAH6Q9C0G6 4158 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 TIAM1Q13009 1591 aa0.31□□□□□ -2.36
CPSF3-205ENST00000489629 C5P01031 1676 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 PRG4Q92954 1404 aaPredicted RBP0.3□□□□□ -2.36
CPSF3-205ENST00000489629 VPS13DQ5THJ4 4388 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 DOT1LQ8TEK3 1739 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 C1orf167Q5SNV9 1468 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 PLEKHH2Q8IVE3 1493 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 MAGI1Q96QZ7 1491 aaPredicted RBP0.3□□□□□ -2.36
CPSF3-205ENST00000489629 ZFYVE16Q7Z3T8 1539 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 TRBV10-1A0A0K0K1A3 114 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 TSPAN19P0C672 248 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 NPC2P61916 151 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 OR2T2Q6IF00 324 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 SPATA8Q6RVD6 105 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 ATP11AUNQ6ZP68 121 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 TSTD1Q8NFU3 115 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 ATP6V0E2Q8NHE4 81 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 DYNLRB2Q8TF09 96 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 SPANXCQ9NY87 97 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 SAMD9LQ8IVG5 1584 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 CLTCL1P53675 1640 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 XRN1Q8IZH2 1706 aaKnown RBP0.3□□□□□ -2.36
CPSF3-205ENST00000489629 ZNF609O15014 1411 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 SOGA1O94964 1423 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 PPIP5K1Q6PFW1 1433 aa0.3□□□□□ -2.36
CPSF3-205ENST00000489629 DNAH2Q9P225 4427 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 PHIPQ8WWQ0 1821 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 ABCC1P33527 1531 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 TNCP24821 2201 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 SSC5DA1L4H1 1573 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 SAMD9Q5K651 1589 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 DNAH3Q8TD57 4116 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 SCRIBQ14160 1630 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 EIF2AK4Q9P2K8 1649 aaKnown RBP0.29□□□□□ -2.36
CPSF3-205ENST00000489629 DNAH11Q96DT5 4516 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 TRBV20-1A0A075B6N2 111 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 PHGR1C9JFL3 82 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 RBP4P02753 201 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 PRH1P02810 166 aa0.29□□□□□ -2.36
CPSF3-205ENST00000489629 RPL37P61927 97 aaKnown RBP0.29□□□□□ -2.36
CPSF3-205ENST00000489629 NCS1P62166 190 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms