RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 STARD9Q9P2P6 4700 aa13.6□□□□□ -0.23
CCM2-216ENST00000488727 TRGV2A0A075B6R0 118 aa13.6□□□□□ -0.23
CCM2-216ENST00000488727 TRAV8-6A0A0B4J262 113 aa13.6□□□□□ -0.23
CCM2-216ENST00000488727 VAMP3Q15836 100 aa13.6□□□□□ -0.23
CCM2-216ENST00000488727 DEFB131BA0A096LNP1 70 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 TRAV10A0A0B4J240 114 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 CFAP126Q5VTH2 177 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 TM2D2Q9BX73 214 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 MYMXA0A1B0GTQ4 84 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 RS1O15537 224 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 ATP5G1P05496 136 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 HTN3P15516 51 aa13.59□□□□□ -0.23
CCM2-216ENST00000488727 C11orf86A6NJI1 115 aa13.58□□□□□ -0.24
CCM2-216ENST00000488727 CASC10Q5T4H9 136 aa13.58□□□□□ -0.24
CCM2-216ENST00000488727 CEMP1Q6PRD7 247 aaPredicted RBP13.58□□□□□ -0.24
CCM2-216ENST00000488727 C9orf118A6NHY6 69 aa13.57□□□□□ -0.24
CCM2-216ENST00000488727 C3orf84H3BNL1 204 aa13.57□□□□□ -0.24
CCM2-216ENST00000488727 CEND1Q8N111 149 aa13.57□□□□□ -0.24
CCM2-216ENST00000488727 DNAJC30Q96LL9 226 aa13.57□□□□□ -0.24
CCM2-216ENST00000488727 PRADC1Q9BSG0 188 aa13.57□□□□□ -0.24
CCM2-216ENST00000488727 NUPR2A6NF83 97 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 IGHV3-53P01767 116 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 HERVK_113P61574 105 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 DEFB104AQ8WTQ1 72 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 IGHV3-73A0A0B4J1V6 119 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 GCSHP23434 173 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 NFE4Q86UQ8 179 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 PYGO1Q9Y3Y4 419 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 TNFRSF18Q9Y5U5 241 aa13.56□□□□□ -0.24
CCM2-216ENST00000488727 FXYD2P54710 66 aa13.55□□□□□ -0.24
CCM2-216ENST00000488727 ZNF479Q96JC4 524 aa13.55□□□□□ -0.24
CCM2-216ENST00000488727 F5H768 121 aa13.54□□□□□ -0.24
CCM2-216ENST00000488727 TRBV7-3A0A075B6L6 115 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 TRAV4A0A0B4J268 109 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 CRYBA4P53673 196 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 AMMECR1LQ6DCA0 310 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 Q6ZSN1 163 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 TENM2Q9NT68 2774 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 IGLV4-3A0A075B6K6 122 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 SMIM13P0DJ93 91 aa13.53□□□□□ -0.24
CCM2-216ENST00000488727 DYNC2H1Q8NCM8 4307 aaKnown RBP13.52□□□□□ -0.24
CCM2-216ENST00000488727 OR4C5Q8NGB2 326 aa13.52□□□□□ -0.25
CCM2-216ENST00000488727 ZNRF2Q8NHG8 242 aa13.52□□□□□ -0.25
CCM2-216ENST00000488727 IGLL5B9A064 214 aa13.51□□□□□ -0.25
CCM2-216ENST00000488727 FHL2Q14192 279 aa13.51□□□□□ -0.25
CCM2-216ENST00000488727 KLK5Q9Y337 293 aaPredicted RBP13.5□□□□□ -0.25
CCM2-216ENST00000488727 ZNF815PA8K554 130 aa13.5□□□□□ -0.25
CCM2-216ENST00000488727 K7EP13 123 aa13.49□□□□□ -0.25
CCM2-216ENST00000488727 AMELXQ99217 191 aa13.49□□□□□ -0.25
CCM2-216ENST00000488727 HIST1H4GQ99525 98 aa13.49□□□□□ -0.25
CCM2-216ENST00000488727 OPRPNQ99935 248 aaPredicted RBP13.49□□□□□ -0.25
CCM2-216ENST00000488727 CHCHD7Q9BUK0 85 aa13.49□□□□□ -0.25
CCM2-216ENST00000488727 TRAV26-1A0A087WT03 109 aa13.48□□□□□ -0.25
CCM2-216ENST00000488727 H3BUT2 72 aa13.48□□□□□ -0.25
CCM2-216ENST00000488727 TMEM170BQ5T4T1 132 aa13.48□□□□□ -0.25
CCM2-216ENST00000488727 VCX2Q9H322 139 aa13.48□□□□□ -0.25
CCM2-216ENST00000488727 SPANXA1Q9NS26 97 aa13.48□□□□□ -0.25
CCM2-216ENST00000488727 TRGV4A0A0C4DH28 118 aa13.47□□□□□ -0.25
CCM2-216ENST00000488727 VSIG2Q96IQ7 327 aa13.47□□□□□ -0.25
CCM2-216ENST00000488727 PLECQ15149 4684 aaKnown RBP13.47□□□□□ -0.25
CCM2-216ENST00000488727 A0A0J9YY99 117 aa13.47□□□□□ -0.25
CCM2-216ENST00000488727 GTF2H5Q6ZYL4 71 aa13.47□□□□□ -0.25
CCM2-216ENST00000488727 FAM104AQ969W3 186 aa13.47□□□□□ -0.25
CCM2-216ENST00000488727 RAB37Q96AX2 223 aa13.47□□□□□ -0.25
CCM2-216ENST00000488727 Q9UF83 564 aa13.47□□□□□ -0.25
CCM2-216ENST00000488727 A0A1B0GWB2 263 aa13.46□□□□□ -0.25
CCM2-216ENST00000488727 A0A1W2PPM0 123 aa13.46□□□□□ -0.25
CCM2-216ENST00000488727 TMEM223A0PJW6 202 aa13.46□□□□□ -0.25
CCM2-216ENST00000488727 NHP2Q9NX24 153 aaKnown RBP13.46□□□□□ -0.25
CCM2-216ENST00000488727 APLNQ9ULZ1 77 aa13.46□□□□□ -0.25
CCM2-216ENST00000488727 K7EP34 96 aa13.45□□□□□ -0.26
CCM2-216ENST00000488727 ZNF22P17026 224 aaPredicted RBP13.45□□□□□ -0.26
CCM2-216ENST00000488727 PRO0255Q9UI72 69 aa13.45□□□□□ -0.26
CCM2-216ENST00000488727 TRBV10-1A0A0K0K1A3 114 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 GAGE10A6NGK3 116 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 LEPROTO15243 131 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 CIDEAO60543 219 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 COTL1Q14019 142 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 PLEKHB2Q96CS7 222 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 UBE2D4Q9Y2X8 147 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 TSPEAR-AS2P59090 65 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 SCGB1D4Q6XE38 83 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 OR5A1Q8NGJ0 315 aa13.44□□□□□ -0.26
CCM2-216ENST00000488727 J3QQQ9 107 aa13.43□□□□□ -0.26
CCM2-216ENST00000488727 K7ERJ3 54 aa13.43□□□□□ -0.26
CCM2-216ENST00000488727 MRPS36P82909 103 aaKnown RBP13.43□□□□□ -0.26
CCM2-216ENST00000488727 SPANXB1Q9NS25 103 aaPredicted RBP13.43□□□□□ -0.26
CCM2-216ENST00000488727 A0A0J9YXV3 536 aa13.42□□□□□ -0.26
CCM2-216ENST00000488727 PAX4O43316 350 aa13.42□□□□□ -0.26
CCM2-216ENST00000488727 SLC25A29Q8N8R3 303 aa13.42□□□□□ -0.26
CCM2-216ENST00000488727 H3BNG1 76 aa13.42□□□□□ -0.26
CCM2-216ENST00000488727 TIMM21Q9BVV7 248 aa13.42□□□□□ -0.26
CCM2-216ENST00000488727 K7EQD1 137 aa13.41□□□□□ -0.26
CCM2-216ENST00000488727 FABP2P12104 132 aa13.41□□□□□ -0.26
CCM2-216ENST00000488727 LGALS3P17931 250 aaKnown RBP13.41□□□□□ -0.26
CCM2-216ENST00000488727 C15orf53Q8NAA6 179 aa13.41□□□□□ -0.26
CCM2-216ENST00000488727 NAA38Q9BRA0 125 aaKnown RBP13.41□□□□□ -0.26
CCM2-216ENST00000488727 LOC100131303A0A0U1RQF7 123 aa13.4□□□□□ -0.26
CCM2-216ENST00000488727 TRBV6-4A0A1B0GX49 114 aa13.4□□□□□ -0.26
CCM2-216ENST00000488727 TMEM238LA0A1B0GVL6 79 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms