RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 P0DMU3 169 aa8.71□□□□□ -1.02
HDAC6-230ENST00000488543 FAM231AP0DMU4 169 aa8.71□□□□□ -1.02
HDAC6-230ENST00000488543 FAM231CP0DMU5 169 aa8.71□□□□□ -1.02
HDAC6-230ENST00000488543 TRBV27A0A0K0K1C4 114 aa8.7□□□□□ -1.02
HDAC6-230ENST00000488543 VCYO14598 125 aa8.7□□□□□ -1.02
HDAC6-230ENST00000488543 DGAT2L7PQ6IED9 249 aa8.7□□□□□ -1.02
HDAC6-230ENST00000488543 LOC107984156A0A0G2JMH3 177 aa8.7□□□□□ -1.02
HDAC6-230ENST00000488543 PRB2P02812 416 aaPredicted RBP8.7□□□□□ -1.02
HDAC6-230ENST00000488543 IGHV4-30-4P0DP06 118 aa8.7□□□□□ -1.02
HDAC6-230ENST00000488543 ARL17AQ8IVW1 177 aa8.7□□□□□ -1.02
HDAC6-230ENST00000488543 Q9UF83 564 aa8.7□□□□□ -1.02
HDAC6-230ENST00000488543 EGFEM1PQ0D2K5 195 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 PMVKQ15126 192 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 DNAH3Q8TD57 4116 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 DNHD1Q96M86 4753 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 RHODO00212 210 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 RNASE13Q5GAN3 156 aaKnown RBP8.69□□□□□ -1.02
HDAC6-230ENST00000488543 Q6ZTI0 123 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 C16orf74Q96GX8 76 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 KIR2DL4Q99706 377 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 PRO0461Q9UI25 63 aa8.69□□□□□ -1.02
HDAC6-230ENST00000488543 TRGV1A0A0A0MS02 117 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 TSPAN13O95857 204 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 MALP21145 153 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 DAZ2Q13117 558 aaKnown RBP8.68□□□□□ -1.02
HDAC6-230ENST00000488543 GAGE13Q4V321 117 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 A0A0J9YY99 117 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 A0A1B0GWB2 263 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 IGHV3-53P01767 116 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 PSMB2P49721 201 aa8.68□□□□□ -1.02
HDAC6-230ENST00000488543 CEMP1Q6PRD7 247 aaPredicted RBP8.68□□□□□ -1.02
HDAC6-230ENST00000488543 TMEM238C9JI98 176 aa8.67□□□□□ -1.02
HDAC6-230ENST00000488543 SMAGPQ0VAQ4 97 aa8.67□□□□□ -1.02
HDAC6-230ENST00000488543 CDIP1Q9H305 208 aa8.67□□□□□ -1.02
HDAC6-230ENST00000488543 NOP10Q9NPE3 64 aaKnown RBP8.67□□□□□ -1.02
HDAC6-230ENST00000488543 SMCPP49901 116 aaPredicted RBP8.66□□□□□ -1.02
HDAC6-230ENST00000488543 OVOL2Q9BRP0 275 aa8.66□□□□□ -1.02
HDAC6-230ENST00000488543 F8W1H4 67 aa8.65□□□□□ -1.02
HDAC6-230ENST00000488543 DEFB135Q30KP9 77 aa8.65□□□□□ -1.02
HDAC6-230ENST00000488543 A0A0J9YXV3 536 aa8.65□□□□□ -1.02
HDAC6-230ENST00000488543 H7C2G1 150 aa8.65□□□□□ -1.02
HDAC6-230ENST00000488543 UBE2D1P51668 147 aa8.65□□□□□ -1.02
HDAC6-230ENST00000488543 AMELXQ99217 191 aa8.65□□□□□ -1.02
HDAC6-230ENST00000488543 TRAV4A0A0B4J268 109 aa8.64□□□□□ -1.03
HDAC6-230ENST00000488543 I3L3M4 83 aa8.64□□□□□ -1.03
HDAC6-230ENST00000488543 RHOHQ15669 191 aa8.64□□□□□ -1.03
HDAC6-230ENST00000488543 X6R8D5 127 aa8.64□□□□□ -1.03
HDAC6-230ENST00000488543 J3QQQ9 107 aa8.64□□□□□ -1.03
HDAC6-230ENST00000488543 EIF4EBP3O60516 100 aaPredicted RBP8.64□□□□□ -1.03
HDAC6-230ENST00000488543 HERVK_113P61574 105 aa8.64□□□□□ -1.03
HDAC6-230ENST00000488543 IGHV3-30P01768 117 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 CFC1BP0CG36 223 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 CFC1P0CG37 223 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 IGHV3-30-5P0DP03 117 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 TIMM17AQ99595 171 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 GAGE12HA6NDE8 117 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 NFE4Q86UQ8 179 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 KIR2DL5BQ8NHK3 375 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 TMEM141Q96I45 108 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 DNAJC30Q96LL9 226 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 TNFRSF18Q9Y5U5 241 aa8.63□□□□□ -1.03
HDAC6-230ENST00000488543 GAGE7O76087 117 aa8.62□□□□□ -1.03
HDAC6-230ENST00000488543 GAGE12FP0CL80 117 aa8.62□□□□□ -1.03
HDAC6-230ENST00000488543 GAGE12GP0CL81 117 aa8.62□□□□□ -1.03
HDAC6-230ENST00000488543 GAGE12IP0CL82 117 aa8.62□□□□□ -1.03
HDAC6-230ENST00000488543 LGALS3P17931 250 aaKnown RBP8.62□□□□□ -1.03
HDAC6-230ENST00000488543 TCL1BO95988 128 aa8.62□□□□□ -1.03
HDAC6-230ENST00000488543 DEFB4AO15263 64 aa8.61□□□□□ -1.03
HDAC6-230ENST00000488543 ZNF22P17026 224 aaPredicted RBP8.61□□□□□ -1.03
HDAC6-230ENST00000488543 APOC4P55056 127 aa8.61□□□□□ -1.03
HDAC6-230ENST00000488543 C20orf203Q8NBC4 194 aa8.61□□□□□ -1.03
HDAC6-230ENST00000488543 IGLV4-3A0A075B6K6 122 aa8.61□□□□□ -1.03
HDAC6-230ENST00000488543 TRAV8-3A0A0A6YYJ7 113 aa8.61□□□□□ -1.03
HDAC6-230ENST00000488543 IGHV3-38A0A0C4DH36 116 aa8.61□□□□□ -1.03
HDAC6-230ENST00000488543 LINC00612Q8N6U2 182 aa8.61□□□□□ -1.03
HDAC6-230ENST00000488543 SLC25A29Q8N8R3 303 aa8.6□□□□□ -1.03
HDAC6-230ENST00000488543 FAM104AQ969W3 186 aa8.6□□□□□ -1.03
HDAC6-230ENST00000488543 TENM3Q9P273 2699 aa8.6□□□□□ -1.03
HDAC6-230ENST00000488543 TMEM223A0PJW6 202 aa8.6□□□□□ -1.03
HDAC6-230ENST00000488543 SMIM9A6NGZ8 99 aa8.6□□□□□ -1.03
HDAC6-230ENST00000488543 K7EQD1 137 aa8.6□□□□□ -1.03
HDAC6-230ENST00000488543 NPC2P61916 151 aa8.6□□□□□ -1.03
HDAC6-230ENST00000488543 SEC61GP60059 68 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 C10orf126Q8N4M7 172 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 SIGMAR1Q99720 223 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 RETNQ9HD89 108 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 TRGV2A0A075B6R0 118 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 TRBV10-1A0A0K0K1A3 114 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 UBE2D3P61077 147 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 UBE2D2P62837 147 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 PAPPA-AS1Q5QFB9 102 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 CHCHD7Q9BUK0 85 aa8.59□□□□□ -1.03
HDAC6-230ENST00000488543 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-230ENST00000488543 IGKV2-29A2NJV5 120 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-230ENST00000488543 MUSTN1Q8IVN3 82 aa8.58□□□□□ -1.04
HDAC6-230ENST00000488543 A0A0U1RRA0 63 aa8.58□□□□□ -1.04
HDAC6-230ENST00000488543 K7EIL1 84 aa8.58□□□□□ -1.04
HDAC6-230ENST00000488543 SCGB1C2P0DMR2 95 aa8.58□□□□□ -1.04
HDAC6-230ENST00000488543 CARD19Q96LW7 228 aa8.58□□□□□ -1.04
HDAC6-230ENST00000488543 FOXI1Q12951 378 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms