RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 FA2HQ7L5A8 372 aa10.52□□□□□ -0.73
C9orf3-219ENST00000488186 PRR34Q9NV39 138 aa10.52□□□□□ -0.73
C9orf3-219ENST00000488186 TRAV8-4A0A0B4J246 113 aa10.51□□□□□ -0.73
C9orf3-219ENST00000488186 RPL39P62891 51 aaKnown RBP10.51□□□□□ -0.73
C9orf3-219ENST00000488186 ZNF664Q8N3J9 261 aa10.51□□□□□ -0.73
C9orf3-219ENST00000488186 UBE2D4Q9Y2X8 147 aa10.51□□□□□ -0.73
C9orf3-219ENST00000488186 IGLV10-54A0A075B6I4 117 aa10.5□□□□□ -0.73
C9orf3-219ENST00000488186 A0A1B0GVY2 172 aa10.5□□□□□ -0.73
C9orf3-219ENST00000488186 S100A1P23297 94 aa10.5□□□□□ -0.73
C9orf3-219ENST00000488186 TIMM21Q9BVV7 248 aa10.5□□□□□ -0.73
C9orf3-219ENST00000488186 CDC42SE2Q9NRR3 84 aa10.5□□□□□ -0.73
C9orf3-219ENST00000488186 CSDC2Q9Y534 153 aaKnown RBP10.5□□□□□ -0.73
C9orf3-219ENST00000488186 SCO1O75880 301 aa10.49□□□□□ -0.73
C9orf3-219ENST00000488186 SPANXA1Q9NS26 97 aa10.49□□□□□ -0.73
C9orf3-219ENST00000488186 CYSLTR1Q9Y271 337 aa10.49□□□□□ -0.73
C9orf3-219ENST00000488186 PKD1P98161 4303 aa10.49□□□□□ -0.73
C9orf3-219ENST00000488186 RAB5BP61020 215 aa10.48□□□□□ -0.73
C9orf3-219ENST00000488186 C2orf66Q6UXQ4 117 aa10.48□□□□□ -0.73
C9orf3-219ENST00000488186 A0A087WTM6 91 aa10.47□□□□□ -0.73
C9orf3-219ENST00000488186 COLCA2A8K830 154 aa10.47□□□□□ -0.73
C9orf3-219ENST00000488186 TRGC2P03986 189 aa10.47□□□□□ -0.73
C9orf3-219ENST00000488186 SS18Q15532 418 aa10.47□□□□□ -0.73
C9orf3-219ENST00000488186 BAALCQ8WXS3 180 aa10.47□□□□□ -0.73
C9orf3-219ENST00000488186 RNASE13Q5GAN3 156 aaKnown RBP10.46□□□□□ -0.73
C9orf3-219ENST00000488186 C18orf32Q8TCD1 76 aa10.46□□□□□ -0.73
C9orf3-219ENST00000488186 BIRC6Q9NR09 4857 aa10.46□□□□□ -0.74
C9orf3-219ENST00000488186 PKHD1P08F94 4074 aa10.45□□□□□ -0.74
C9orf3-219ENST00000488186 LINC00959A0A1B0GUT2 108 aa10.45□□□□□ -0.74
C9orf3-219ENST00000488186 ATP6V1G1O75348 118 aa10.45□□□□□ -0.74
C9orf3-219ENST00000488186 LINC00614P0C842 121 aa10.45□□□□□ -0.74
C9orf3-219ENST00000488186 AP5S1Q9NUS5 200 aa10.45□□□□□ -0.74
C9orf3-219ENST00000488186 PYGO1Q9Y3Y4 419 aa10.45□□□□□ -0.74
C9orf3-219ENST00000488186 GAGE12HA6NDE8 117 aa10.44□□□□□ -0.74
C9orf3-219ENST00000488186 LINC01549A6NIU2 74 aa10.44□□□□□ -0.74
C9orf3-219ENST00000488186 LECT2O14960 151 aa10.44□□□□□ -0.74
C9orf3-219ENST00000488186 MRPS36P82909 103 aaKnown RBP10.44□□□□□ -0.74
C9orf3-219ENST00000488186 Q6ZN92 141 aa10.44□□□□□ -0.74
C9orf3-219ENST00000488186 Q6ZUT4 128 aa10.44□□□□□ -0.74
C9orf3-219ENST00000488186 SPATA12Q7Z6I5 190 aa10.44□□□□□ -0.74
C9orf3-219ENST00000488186 CHCHD10Q8WYQ3 142 aaPredicted RBP10.44□□□□□ -0.74
C9orf3-219ENST00000488186 TRAV13-1A0A0B4J241 112 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 LRCOL1A6NCL2 159 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 C1orf196B1AJZ1 125 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 CCL25O15444 150 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 XCL1P47992 114 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 MAPKAPK5-AS1Q8N8E1 139 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 TOMM6Q96B49 74 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 SCGB3A1Q96QR1 104 aa10.43□□□□□ -0.74
C9orf3-219ENST00000488186 OPRPNQ99935 248 aaPredicted RBP10.43□□□□□ -0.74
C9orf3-219ENST00000488186 LINC01546A6NGU7 62 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 IFITM10A6NMD0 228 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 C14orf177Q52M58 125 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 PAPPA-AS1Q5QFB9 102 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 TEX43Q6ZNM6 134 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 BAGE3Q86Y29 109 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 TMEM141Q96I45 108 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 VCX2Q9H322 139 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 PGPEP1Q9NXJ5 209 aa10.42□□□□□ -0.74
C9orf3-219ENST00000488186 DNAH11Q96DT5 4516 aa10.41□□□□□ -0.74
C9orf3-219ENST00000488186 Q8N814 137 aa10.41□□□□□ -0.74
C9orf3-219ENST00000488186 C2orf88Q9BSF0 95 aa10.41□□□□□ -0.74
C9orf3-219ENST00000488186 IGLV4-3A0A075B6K6 122 aa10.4□□□□□ -0.74
C9orf3-219ENST00000488186 USP17L23D6RBM5 183 aa10.4□□□□□ -0.74
C9orf3-219ENST00000488186 NPSP0C0P6 89 aa10.4□□□□□ -0.74
C9orf3-219ENST00000488186 CFAP161Q6P656 301 aa10.4□□□□□ -0.74
C9orf3-219ENST00000488186 ERASQ7Z444 233 aa10.4□□□□□ -0.74
C9orf3-219ENST00000488186 KRTAP26-1Q6PEX3 210 aa10.39□□□□□ -0.75
C9orf3-219ENST00000488186 CD164L2Q6UWJ8 174 aa10.39□□□□□ -0.75
C9orf3-219ENST00000488186 CHCHD1Q96BP2 118 aaKnown RBP10.39□□□□□ -0.75
C9orf3-219ENST00000488186 TIMM17AQ99595 171 aa10.39□□□□□ -0.75
C9orf3-219ENST00000488186 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.38□□□□□ -0.75
C9orf3-219ENST00000488186 IGIPA6NJ69 53 aa10.38□□□□□ -0.75
C9orf3-219ENST00000488186 C16orf90A8MZG2 172 aa10.38□□□□□ -0.75
C9orf3-219ENST00000488186 WFDC2Q14508 124 aa10.38□□□□□ -0.75
C9orf3-219ENST00000488186 IGLV5-52A0A0A0MRZ9 124 aa10.37□□□□□ -0.75
C9orf3-219ENST00000488186 HBDP02042 147 aa10.37□□□□□ -0.75
C9orf3-219ENST00000488186 MALP21145 153 aa10.37□□□□□ -0.75
C9orf3-219ENST00000488186 KRTAP10-2P60368 255 aa10.37□□□□□ -0.75
C9orf3-219ENST00000488186 NTN5Q8WTR8 489 aaPredicted RBP10.37□□□□□ -0.75
C9orf3-219ENST00000488186 URB1-AS1Q96HZ7 61 aa10.37□□□□□ -0.75
C9orf3-219ENST00000488186 DYNC1H1Q14204 4646 aaKnown RBP10.37□□□□□ -0.75
C9orf3-219ENST00000488186 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.36□□□□□ -0.75
C9orf3-219ENST00000488186 FOXI1Q12951 378 aa10.36□□□□□ -0.75
C9orf3-219ENST00000488186 PMCHL1Q16048 86 aa10.36□□□□□ -0.75
C9orf3-219ENST00000488186 CDPF1Q6NVV7 123 aa10.36□□□□□ -0.75
C9orf3-219ENST00000488186 FAM104AQ969W3 186 aa10.36□□□□□ -0.75
C9orf3-219ENST00000488186 hDV102S1A0JD36 115 aa10.35□□□□□ -0.75
C9orf3-219ENST00000488186 COX7A2LO14548 114 aa10.35□□□□□ -0.75
C9orf3-219ENST00000488186 HSBP1O75506 76 aa10.35□□□□□ -0.75
C9orf3-219ENST00000488186 FUSP35637 526 aaKnown RBP eCLIP10.35□□□□□ -0.75
C9orf3-219ENST00000488186 NDUFA6P56556 154 aa10.34□□□□□ -0.75
C9orf3-219ENST00000488186 ZC2HC1BQ5TFG8 222 aa10.34□□□□□ -0.75
C9orf3-219ENST00000488186 AMELXQ99217 191 aa10.34□□□□□ -0.75
C9orf3-219ENST00000488186 IGHV1-58A0A0C4DH39 117 aa10.33□□□□□ -0.76
C9orf3-219ENST00000488186 C5orf38Q86SI9 138 aa10.33□□□□□ -0.76
C9orf3-219ENST00000488186 ATP5LO75964 103 aa10.32□□□□□ -0.76
C9orf3-219ENST00000488186 APOMO95445 188 aa10.32□□□□□ -0.76
C9orf3-219ENST00000488186 PRSS1P07477 247 aa10.32□□□□□ -0.76
C9orf3-219ENST00000488186 GCSHP23434 173 aa10.32□□□□□ -0.76
C9orf3-219ENST00000488186 UBE2D1P51668 147 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms