RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZNF815PA8K554 130 aa0.72□□□□□ -2.29
UPF3B-203ENST00000478840 SSBP3-AS1Q7Z2R9 100 aa0.72□□□□□ -2.29
UPF3B-203ENST00000478840 CDC42SE2Q9NRR3 84 aa0.72□□□□□ -2.29
UPF3B-203ENST00000478840 ARHGAP5Q13017 1502 aa0.72□□□□□ -2.29
UPF3B-203ENST00000478840 SFT2D2O95562 160 aa0.71□□□□□ -2.3
UPF3B-203ENST00000478840 COX6CP09669 75 aa0.71□□□□□ -2.3
UPF3B-203ENST00000478840 KRTAP21-1Q3LI58 79 aa0.71□□□□□ -2.3
UPF3B-203ENST00000478840 CNFNQ9BYD5 112 aa0.71□□□□□ -2.3
UPF3B-203ENST00000478840 LRRC37A2A6NM11 1700 aa0.71□□□□□ -2.3
UPF3B-203ENST00000478840 TTC28Q96AY4 2481 aa0.71□□□□□ -2.3
UPF3B-203ENST00000478840 SHANK2Q9UPX8 1470 aa0.7□□□□□ -2.3
UPF3B-203ENST00000478840 RBP2P50120 134 aa0.7□□□□□ -2.3
UPF3B-203ENST00000478840 NXT2Q9NPJ8 142 aaKnown RBP0.7□□□□□ -2.3
UPF3B-203ENST00000478840 ZFYVE16Q7Z3T8 1539 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 TNCP24821 2201 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 MYOM1P52179 1685 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 TRAV30A0A087WSZ9 112 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 TRAV22A0A0B4J277 110 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 ATP6V1G2-DDX39BF2Z307 99 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 UBE2D3P61077 147 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 UBE2D2P62837 147 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 Q0VG73 95 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 ACBD7Q8N6N7 88 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 FAIMQ9NVQ4 179 aa0.69□□□□□ -2.3
UPF3B-203ENST00000478840 MGPP08493 103 aa0.68□□□□□ -2.3
UPF3B-203ENST00000478840 SNCAP37840 140 aa0.68□□□□□ -2.3
UPF3B-203ENST00000478840 MANBALQ9NQG1 85 aa0.68□□□□□ -2.3
UPF3B-203ENST00000478840 PRO1854Q9UHT4 67 aa0.68□□□□□ -2.3
UPF3B-203ENST00000478840 PSME4Q14997 1843 aa0.68□□□□□ -2.3
UPF3B-203ENST00000478840 POLQO75417 2590 aa0.67□□□□□ -2.3
UPF3B-203ENST00000478840 SPHKAPQ2M3C7 1700 aa0.67□□□□□ -2.3
UPF3B-203ENST00000478840 HAMPP81172 84 aa0.67□□□□□ -2.3
UPF3B-203ENST00000478840 LINC00472Q9H8W2 130 aa0.67□□□□□ -2.3
UPF3B-203ENST00000478840 SPCS1Q9Y6A9 102 aa0.67□□□□□ -2.3
UPF3B-203ENST00000478840 ASXL3Q9C0F0 2248 aa0.66□□□□□ -2.3
UPF3B-203ENST00000478840 ZNF236Q9UL36 1845 aa0.66□□□□□ -2.3
UPF3B-203ENST00000478840 KIF21AQ7Z4S6 1674 aa0.66□□□□□ -2.3
UPF3B-203ENST00000478840 TRAPPC2P0DI81 140 aa0.66□□□□□ -2.3
UPF3B-203ENST00000478840 TRAPPC2BP0DI82 140 aa0.66□□□□□ -2.3
UPF3B-203ENST00000478840 FAM213BQ8TBF2 198 aa0.66□□□□□ -2.3
UPF3B-203ENST00000478840 ABCA12Q86UK0 2595 aa0.66□□□□□ -2.3
UPF3B-203ENST00000478840 TET3O43151 1660 aa0.65□□□□□ -2.3
UPF3B-203ENST00000478840 KDM3BQ7LBC6 1761 aa0.65□□□□□ -2.3
UPF3B-203ENST00000478840 AHNAK2Q8IVF2 5795 aa0.65□□□□□ -2.3
UPF3B-203ENST00000478840 CRYM-AS1A6NIL9 109 aa0.65□□□□□ -2.31
UPF3B-203ENST00000478840 Q6JHZ5 121 aa0.65□□□□□ -2.31
UPF3B-203ENST00000478840 TPRP12270 2363 aaKnown RBP0.65□□□□□ -2.31
UPF3B-203ENST00000478840 TCHHQ07283 1943 aa0.65□□□□□ -2.31
UPF3B-203ENST00000478840 FAM208BQ5VWN6 2430 aa0.65□□□□□ -2.31
UPF3B-203ENST00000478840 RAPGEF6Q8TEU7 1601 aa0.64□□□□□ -2.31
UPF3B-203ENST00000478840 WNK3Q9BYP7 1800 aa0.64□□□□□ -2.31
UPF3B-203ENST00000478840 IGLC1P0CG04 106 aa0.64□□□□□ -2.31
UPF3B-203ENST00000478840 TMEM263Q8WUH6 116 aaKnown RBP0.64□□□□□ -2.31
UPF3B-203ENST00000478840 ARL2-SNX15V9GYD0 113 aa0.64□□□□□ -2.31
UPF3B-203ENST00000478840 PIEZO1Q92508 2521 aa0.64□□□□□ -2.31
UPF3B-203ENST00000478840 ANK2Q01484 3957 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 NDUFC1O43677 76 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 Q5BKY6 102 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 SPRR4Q96PI1 79 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 AP4S1Q9Y587 144 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 PLXNB2O15031 1838 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 HMGXB3Q12766 1538 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 EHBP1L1Q8N3D4 1523 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 USP24Q9UPU5 2620 aa0.63□□□□□ -2.31
UPF3B-203ENST00000478840 ARHGEF5Q12774 1597 aa0.62□□□□□ -2.31
UPF3B-203ENST00000478840 DIP2CQ9Y2E4 1556 aa0.62□□□□□ -2.31
UPF3B-203ENST00000478840 SBF2Q86WG5 1849 aa0.62□□□□□ -2.31
UPF3B-203ENST00000478840 LINC00032P0C843 101 aa0.62□□□□□ -2.31
UPF3B-203ENST00000478840 SAA2P0DJI9 122 aaPredicted RBP0.62□□□□□ -2.31
UPF3B-203ENST00000478840 SEC11AP67812 179 aa0.62□□□□□ -2.31
UPF3B-203ENST00000478840 FAM223AQ8IWN6 122 aa0.62□□□□□ -2.31
UPF3B-203ENST00000478840 CNTLNQ9NXG0 1405 aa0.62□□□□□ -2.31
UPF3B-203ENST00000478840 hADV29S1A0JD25 119 aa0.61□□□□□ -2.31
UPF3B-203ENST00000478840 S100A10P60903 97 aa0.61□□□□□ -2.31
UPF3B-203ENST00000478840 PRO0255Q9UI72 69 aa0.61□□□□□ -2.31
UPF3B-203ENST00000478840 ABCC5O15440 1437 aa0.61□□□□□ -2.31
UPF3B-203ENST00000478840 ERCC6L2Q5T890 1561 aa0.61□□□□□ -2.31
UPF3B-203ENST00000478840 AHCTF1Q8WYP5 2266 aa0.61□□□□□ -2.31
UPF3B-203ENST00000478840 MRC2Q9UBG0 1479 aa0.61□□□□□ -2.31
UPF3B-203ENST00000478840 SPINK1P00995 79 aa0.6□□□□□ -2.31
UPF3B-203ENST00000478840 VPS8Q8N3P4 1428 aa0.6□□□□□ -2.31
UPF3B-203ENST00000478840 LRP6O75581 1613 aa0.6□□□□□ -2.31
UPF3B-203ENST00000478840 CC2D2AQ9P2K1 1620 aa0.6□□□□□ -2.31
UPF3B-203ENST00000478840 F8P00451 2351 aa0.6□□□□□ -2.31
UPF3B-203ENST00000478840 GNGT2O14610 69 aa0.59□□□□□ -2.31
UPF3B-203ENST00000478840 BCE1O60756 84 aa0.59□□□□□ -2.31
UPF3B-203ENST00000478840 S100A8P05109 93 aa0.59□□□□□ -2.31
UPF3B-203ENST00000478840 LAMC1P11047 1609 aa0.58□□□□□ -2.32
UPF3B-203ENST00000478840 A0A1B0GWA3 101 aa0.58□□□□□ -2.32
UPF3B-203ENST00000478840 M0R143 59 aa0.58□□□□□ -2.32
UPF3B-203ENST00000478840 UBA52P62987 128 aaKnown RBP0.58□□□□□ -2.32
UPF3B-203ENST00000478840 DPY30Q9C005 99 aa0.58□□□□□ -2.32
UPF3B-203ENST00000478840 TP53AIP1Q9HCN2 124 aa0.58□□□□□ -2.32
UPF3B-203ENST00000478840 TEX14Q8IWB6 1497 aa0.58□□□□□ -2.32
UPF3B-203ENST00000478840 CELSR2Q9HCU4 2923 aa0.58□□□□□ -2.32
UPF3B-203ENST00000478840 NSD3Q9BZ95 1437 aa0.57□□□□□ -2.32
UPF3B-203ENST00000478840 KDM5AP29375 1690 aaKnown RBP0.57□□□□□ -2.32
UPF3B-203ENST00000478840 GAPVD1Q14C86 1478 aa0.57□□□□□ -2.32
UPF3B-203ENST00000478840 PRO1933Q9H354 126 aa0.57□□□□□ -2.32
UPF3B-203ENST00000478840 LINC00846Q9NV44 126 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 204.2 ms