RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 PLXNA2O75051 1894 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 CNOT1A5YKK6 2376 aaKnown RBP1.99□□□□□ -2.09
VPS13D-207ENST00000476169 TNRC6BQ9UPQ9 1833 aaKnown RBP1.99□□□□□ -2.09
VPS13D-207ENST00000476169 TRIOO75962 3097 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 A6NIN4 97 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 H3BQF6 201 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 NDUFB6O95139 128 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 PPYP01298 95 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 IGHV3-33P01772 117 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 IGKCP01834 107 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 UQCRHP07919 91 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 SPANXN1Q5VSR9 72 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.99□□□□□ -2.09
VPS13D-207ENST00000476169 TMEM14CQ9P0S9 112 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 MAP1BP46821 2468 aaKnown RBP1.99□□□□□ -2.09
VPS13D-207ENST00000476169 CACNA1BQ00975 2339 aa1.99□□□□□ -2.09
VPS13D-207ENST00000476169 MYOFQ9NZM1 2061 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 TRAV23DV6A0A075B6W5 121 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 MCRIP1C9JLW8 97 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 NUPR1O60356 82 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 TFF1P04155 84 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 MPV17LQ2QL34 196 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 S100A7L2Q5SY68 101 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 ZNF625Q96I27 306 aaPredicted RBP1.98□□□□□ -2.09
VPS13D-207ENST00000476169 WFDC6Q9BQY6 131 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 WFDC10AQ9H1F0 79 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 ZNF462Q96JM2 2506 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 KMT2BQ9UMN6 2715 aaPredicted RBP1.98□□□□□ -2.09
VPS13D-207ENST00000476169 DNHD1Q96M86 4753 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 VPS13AQ96RL7 3174 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 SPTBN4Q9H254 2564 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 EML5Q05BV3 1969 aa1.98□□□□□ -2.09
VPS13D-207ENST00000476169 KNL1Q8NG31 2342 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 ASPMQ8IZT6 3477 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 TCHHQ07283 1943 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 FRYQ5TBA9 3013 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 TRAV2A0A0B4J234 112 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 CCL25O15444 150 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 HMGN2P05204 90 aaKnown RBP1.97□□□□□ -2.09
VPS13D-207ENST00000476169 TFF3Q07654 80 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 CATR1Q13166 79 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 C9orf153Q5TBE3 101 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 CSAG1Q6PB30 78 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 SVBPQ8N300 66 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 LIMD2Q9BT23 127 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 SPANXDQ9BXN6 97 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 COA4Q9NYJ1 87 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 NDUFA12Q9UI09 145 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 DMXL1Q9Y485 3027 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 FREM3P0C091 2139 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 MED12LQ86YW9 2145 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 AHCTF1Q8WYP5 2266 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 ASXL3Q9C0F0 2248 aa1.97□□□□□ -2.09
VPS13D-207ENST00000476169 AKAP13Q12802 2813 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 PTPRQQ9UMZ3 2332 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 URB1O60287 2271 aaKnown RBP1.96□□□□□ -2.1
VPS13D-207ENST00000476169 CEP192Q8TEP8 1941 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 IGLV3-32A0A0A0MS00 114 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 JMJD7-PLA2G4BH0Y9G9 81 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 HMGN4O00479 90 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 SLC25A6P12236 298 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 LYPD5Q6UWN5 251 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 LINC00299Q6ZSB3 139 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 PPDPFLQ8WWR9 84 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 DPY30Q9C005 99 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 MRPL36Q9P0J6 103 aaKnown RBP1.96□□□□□ -2.1
VPS13D-207ENST00000476169 IER3IP1Q9Y5U9 82 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 HEATR1Q9H583 2144 aaKnown RBP1.96□□□□□ -2.1
VPS13D-207ENST00000476169 FREM2Q5SZK8 3169 aa1.96□□□□□ -2.1
VPS13D-207ENST00000476169 ANKRD36A6QL64 1941 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 UQCRHLA0A096LP55 91 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 TMEM218A2RU14 115 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 FXYD1O00168 92 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 MRPS14O60783 128 aaKnown RBP1.95□□□□□ -2.1
VPS13D-207ENST00000476169 S100A8P05109 93 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 S100A3P33764 101 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 C8orf59Q8N0T1 100 aaPredicted RBP1.95□□□□□ -2.1
VPS13D-207ENST00000476169 LSM10Q969L4 123 aaKnown RBP1.95□□□□□ -2.1
VPS13D-207ENST00000476169 TMEM141Q96I45 108 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 ATG5Q9H1Y0 275 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 MED9Q9NWA0 146 aa1.95□□□□□ -2.1
VPS13D-207ENST00000476169 ANK3Q12955 4377 aaKnown RBP1.95□□□□□ -2.1
VPS13D-207ENST00000476169 CFAP47Q6ZTR5 3102 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 MDC1Q14676 2089 aaKnown RBP1.94□□□□□ -2.1
VPS13D-207ENST00000476169 FREM1Q5H8C1 2179 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 PIGBOS1A0A0B4J2F0 54 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 A0A0G2JND7 137 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 DEFB108AA8MXU0 73 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 IFI6P09912 130 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 COX6B1P14854 86 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 UBE2G1P62253 170 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 SPRNQ5BIV9 151 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 Q6AWC8 147 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 C10orf105Q8TEF2 133 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 C10orf82Q8WW14 230 aa1.94□□□□□ -2.1
VPS13D-207ENST00000476169 SMG1Q96Q15 3661 aaKnown RBP1.94□□□□□ -2.1
VPS13D-207ENST00000476169 FN1P02751 2386 aaKnown RBP1.93□□□□□ -2.1
VPS13D-207ENST00000476169 CHD6Q8TD26 2715 aa1.93□□□□□ -2.1
VPS13D-207ENST00000476169 PCNX2A6NKB5 2137 aa1.93□□□□□ -2.1
VPS13D-207ENST00000476169 TRBV6-7A0A0A0MS04 114 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms