RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PPP1R17O96001 155 aa11.53□□□□□ -0.56
UPF3A-203ENST00000474056 AP5S1Q9NUS5 200 aa11.53□□□□□ -0.56
UPF3A-203ENST00000474056 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.53□□□□□ -0.56
UPF3A-203ENST00000474056 A0A1B0GXF2 115 aa11.52□□□□□ -0.57
UPF3A-203ENST00000474056 SDIM1Q6ZPB5 146 aa11.52□□□□□ -0.57
UPF3A-203ENST00000474056 MRPL52Q86TS9 123 aaKnown RBP11.52□□□□□ -0.57
UPF3A-203ENST00000474056 LINC00959A0A1B0GUT2 108 aa11.51□□□□□ -0.57
UPF3A-203ENST00000474056 PPP1R2P9O14990 202 aa11.51□□□□□ -0.57
UPF3A-203ENST00000474056 FCER1GP30273 86 aa11.51□□□□□ -0.57
UPF3A-203ENST00000474056 HBBP68871 147 aa11.51□□□□□ -0.57
UPF3A-203ENST00000474056 FOXI1Q12951 378 aa11.51□□□□□ -0.57
UPF3A-203ENST00000474056 HIGD2BQ4VC39 106 aa11.51□□□□□ -0.57
UPF3A-203ENST00000474056 CDC42SE2Q9NRR3 84 aa11.51□□□□□ -0.57
UPF3A-203ENST00000474056 LINC00862A6NCI5 91 aa11.5□□□□□ -0.57
UPF3A-203ENST00000474056 CKS2P33552 79 aa11.5□□□□□ -0.57
UPF3A-203ENST00000474056 CFAP161Q6P656 301 aa11.5□□□□□ -0.57
UPF3A-203ENST00000474056 KIR2DL4Q99706 377 aa11.5□□□□□ -0.57
UPF3A-203ENST00000474056 DMBT1Q9UGM3 2413 aaPredicted RBP11.5□□□□□ -0.57
UPF3A-203ENST00000474056 TRBV24-1A0A075B6N3 115 aa11.49□□□□□ -0.57
UPF3A-203ENST00000474056 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-203ENST00000474056 CCL25O15444 150 aa11.49□□□□□ -0.57
UPF3A-203ENST00000474056 XCL1P47992 114 aa11.49□□□□□ -0.57
UPF3A-203ENST00000474056 KRTAP10-4P60372 401 aaPredicted RBP11.49□□□□□ -0.57
UPF3A-203ENST00000474056 RAB14P61106 215 aa11.49□□□□□ -0.57
UPF3A-203ENST00000474056 IGHV3-64A0A075B6Q5 118 aa11.48□□□□□ -0.57
UPF3A-203ENST00000474056 D6R8Y8 96 aa11.48□□□□□ -0.57
UPF3A-203ENST00000474056 S100A8P05109 93 aa11.48□□□□□ -0.57
UPF3A-203ENST00000474056 ZNF664Q8N3J9 261 aa11.48□□□□□ -0.57
UPF3A-203ENST00000474056 C20orf78Q9BR46 151 aa11.48□□□□□ -0.57
UPF3A-203ENST00000474056 UBE2D4Q9Y2X8 147 aa11.48□□□□□ -0.57
UPF3A-203ENST00000474056 F8W036 122 aa11.47□□□□□ -0.57
UPF3A-203ENST00000474056 TNFRSF6BO95407 300 aa11.47□□□□□ -0.57
UPF3A-203ENST00000474056 GVQW2A0A096LPI5 108 aaPredicted RBP11.46□□□□□ -0.57
UPF3A-203ENST00000474056 NPYP01303 97 aa11.46□□□□□ -0.57
UPF3A-203ENST00000474056 RPL32P62910 135 aaKnown RBP11.46□□□□□ -0.57
UPF3A-203ENST00000474056 PNRC1Q12796 327 aaPredicted RBP11.46□□□□□ -0.57
UPF3A-203ENST00000474056 CIRBPQ14011 172 aaKnown RBP11.46□□□□□ -0.57
UPF3A-203ENST00000474056 SS18Q15532 418 aa11.46□□□□□ -0.57
UPF3A-203ENST00000474056 RNASE13Q5GAN3 156 aaKnown RBP11.46□□□□□ -0.57
UPF3A-203ENST00000474056 ATP5L2Q7Z4Y8 100 aa11.46□□□□□ -0.57
UPF3A-203ENST00000474056 SMIM2Q9BVW6 85 aa11.46□□□□□ -0.57
UPF3A-203ENST00000474056 CHTF8P0CG12 524 aa11.45□□□□□ -0.58
UPF3A-203ENST00000474056 CLLU1Q5K131 121 aa11.45□□□□□ -0.58
UPF3A-203ENST00000474056 CSDC2Q9Y534 153 aaKnown RBP11.45□□□□□ -0.58
UPF3A-203ENST00000474056 PKHD1L1Q86WI1 4243 aa11.44□□□□□ -0.58
UPF3A-203ENST00000474056 CD164L2Q6UWJ8 174 aa11.44□□□□□ -0.58
UPF3A-203ENST00000474056 Q6ZUT4 128 aa11.44□□□□□ -0.58
UPF3A-203ENST00000474056 LRP1Q07954 4544 aaKnown RBP11.44□□□□□ -0.58
UPF3A-203ENST00000474056 FAT3Q8TDW7 4589 aa11.43□□□□□ -0.58
UPF3A-203ENST00000474056 RPL39P62891 51 aaKnown RBP11.43□□□□□ -0.58
UPF3A-203ENST00000474056 SMAGPQ0VAQ4 97 aa11.43□□□□□ -0.58
UPF3A-203ENST00000474056 TMEM18Q96B42 140 aa11.43□□□□□ -0.58
UPF3A-203ENST00000474056 ANAPC16Q96DE5 110 aa11.43□□□□□ -0.58
UPF3A-203ENST00000474056 IGHV1-58A0A0C4DH39 117 aa11.42□□□□□ -0.58
UPF3A-203ENST00000474056 PHOX2AO14813 284 aa11.42□□□□□ -0.58
UPF3A-203ENST00000474056 PPBPP02775 128 aa11.42□□□□□ -0.58
UPF3A-203ENST00000474056 RPL37AP61513 92 aaKnown RBP11.42□□□□□ -0.58
UPF3A-203ENST00000474056 COX6A2Q02221 97 aa11.42□□□□□ -0.58
UPF3A-203ENST00000474056 SPACA4Q8TDM5 124 aa11.42□□□□□ -0.58
UPF3A-203ENST00000474056 LINC00526Q96FQ7 95 aa11.42□□□□□ -0.58
UPF3A-203ENST00000474056 TIMM21Q9BVV7 248 aa11.42□□□□□ -0.58
UPF3A-203ENST00000474056 TCAPO15273 167 aa11.41□□□□□ -0.58
UPF3A-203ENST00000474056 MT-ND4LP03901 98 aa11.41□□□□□ -0.58
UPF3A-203ENST00000474056 IFITM2Q01629 132 aa11.41□□□□□ -0.58
UPF3A-203ENST00000474056 ORMDL3Q8N138 153 aa11.41□□□□□ -0.58
UPF3A-203ENST00000474056 PRSS3P2Q8NHM4 247 aa11.41□□□□□ -0.58
UPF3A-203ENST00000474056 KRTAP3-3Q9BYR6 98 aa11.41□□□□□ -0.58
UPF3A-203ENST00000474056 KRTAP3-2Q9BYR7 98 aa11.41□□□□□ -0.58
UPF3A-203ENST00000474056 A0A087WYN8 130 aa11.4□□□□□ -0.58
UPF3A-203ENST00000474056 TRAV13-1A0A0B4J241 112 aa11.4□□□□□ -0.58
UPF3A-203ENST00000474056 C1orf196B1AJZ1 125 aa11.4□□□□□ -0.58
UPF3A-203ENST00000474056 TMEM136Q6ZRR5 245 aa11.4□□□□□ -0.58
UPF3A-203ENST00000474056 PRELID3AQ96N28 172 aa11.4□□□□□ -0.58
UPF3A-203ENST00000474056 ADCYAP1P18509 176 aa11.39□□□□□ -0.59
UPF3A-203ENST00000474056 FAM104AQ969W3 186 aa11.39□□□□□ -0.59
UPF3A-203ENST00000474056 DPH3Q96FX2 82 aa11.38□□□□□ -0.59
UPF3A-203ENST00000474056 IGKV2-24A0A0C4DH68 120 aa11.37□□□□□ -0.59
UPF3A-203ENST00000474056 OPRPNQ99935 248 aaPredicted RBP11.37□□□□□ -0.59
UPF3A-203ENST00000474056 KRTAP29-1A8MX34 341 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-203ENST00000474056 J3QL48 77 aa11.36□□□□□ -0.59
UPF3A-203ENST00000474056 ZNF561-AS1K7EIQ3 104 aa11.36□□□□□ -0.59
UPF3A-203ENST00000474056 COX7A2LO14548 114 aa11.36□□□□□ -0.59
UPF3A-203ENST00000474056 HNRNPA3P51991 378 aaKnown RBP11.36□□□□□ -0.59
UPF3A-203ENST00000474056 CARD19Q96LW7 228 aa11.36□□□□□ -0.59
UPF3A-203ENST00000474056 SPANXA1Q9NS26 97 aa11.36□□□□□ -0.59
UPF3A-203ENST00000474056 PLAC8Q9NZF1 115 aa11.36□□□□□ -0.59
UPF3A-203ENST00000474056 A0A096LNI7 61 aa11.35□□□□□ -0.59
UPF3A-203ENST00000474056 MALP21145 153 aa11.35□□□□□ -0.59
UPF3A-203ENST00000474056 MAJINQ3KP22 176 aa11.35□□□□□ -0.59
UPF3A-203ENST00000474056 C5orf38Q86SI9 138 aa11.35□□□□□ -0.59
UPF3A-203ENST00000474056 LOC389332A0A1B0GUA5 103 aa11.34□□□□□ -0.59
UPF3A-203ENST00000474056 PRSS47A8MTI9 375 aa11.34□□□□□ -0.59
UPF3A-203ENST00000474056 RAB5AP20339 215 aa11.34□□□□□ -0.59
UPF3A-203ENST00000474056 MRPS36P82909 103 aaKnown RBP11.34□□□□□ -0.59
UPF3A-203ENST00000474056 UQCC3Q6UW78 93 aa11.34□□□□□ -0.59
UPF3A-203ENST00000474056 LAMTOR2Q9Y2Q5 125 aa11.34□□□□□ -0.59
UPF3A-203ENST00000474056 IGLV4-69A0A075B6H9 119 aa11.33□□□□□ -0.6
UPF3A-203ENST00000474056 TMEM218A2RU14 115 aa11.33□□□□□ -0.6
UPF3A-203ENST00000474056 SYCNQ0VAF6 134 aa11.33□□□□□ -0.6
UPF3A-203ENST00000474056 MAP1LC3AQ9H492 121 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 271.8 ms