RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 COX17Q14061 63 aa-2.15□□□□□ -2.75
PRPF40A-207ENST00000471701 MORN2Q502X0 79 aa-2.15□□□□□ -2.75
PRPF40A-207ENST00000471701 MMGT1Q8N4V1 131 aa-2.15□□□□□ -2.75
PRPF40A-207ENST00000471701 SPTSSAQ969W0 71 aa-2.15□□□□□ -2.75
PRPF40A-207ENST00000471701 V9GYH0 126 aa-2.15□□□□□ -2.75
PRPF40A-207ENST00000471701 HTTP42858 3142 aa-2.15□□□□□ -2.75
PRPF40A-207ENST00000471701 RYR3Q15413 4870 aa-2.16□□□□□ -2.75
PRPF40A-207ENST00000471701 HIST1H1AQ02539 215 aaPredicted RBP-2.16□□□□□ -2.76
PRPF40A-207ENST00000471701 DEFB135Q30KP9 77 aa-2.16□□□□□ -2.76
PRPF40A-207ENST00000471701 HECTD1Q9ULT8 2610 aa-2.16□□□□□ -2.76
PRPF40A-207ENST00000471701 SPTBN4Q9H254 2564 aa-2.17□□□□□ -2.76
PRPF40A-207ENST00000471701 SIX6O95475 246 aa-2.17□□□□□ -2.76
PRPF40A-207ENST00000471701 NSD3Q9BZ95 1437 aa-2.17□□□□□ -2.76
PRPF40A-207ENST00000471701 GOLGA4Q13439 2230 aaKnown RBP-2.18□□□□□ -2.76
PRPF40A-207ENST00000471701 NDUFB6O95139 128 aa-2.18□□□□□ -2.76
PRPF40A-207ENST00000471701 C10orf128Q5T292 105 aa-2.18□□□□□ -2.76
PRPF40A-207ENST00000471701 AIF1LQ9BQI0 150 aa-2.18□□□□□ -2.76
PRPF40A-207ENST00000471701 OVOS2A0A0J9YW53 1432 aa-2.18□□□□□ -2.76
PRPF40A-207ENST00000471701 OVOS2Q6IE36 1432 aa-2.18□□□□□ -2.76
PRPF40A-207ENST00000471701 AKAP9Q99996 3911 aa-2.19□□□□□ -2.76
PRPF40A-207ENST00000471701 IFT140Q96RY7 1462 aa-2.19□□□□□ -2.76
PRPF40A-207ENST00000471701 VPS13DQ5THJ4 4388 aa-2.19□□□□□ -2.76
PRPF40A-207ENST00000471701 SPAARA0A1B0GVQ0 90 aa-2.19□□□□□ -2.76
PRPF40A-207ENST00000471701 HCG22E2RYF7 251 aa-2.19□□□□□ -2.76
PRPF40A-207ENST00000471701 LENEPQ9Y5L5 61 aa-2.19□□□□□ -2.76
PRPF40A-207ENST00000471701 ARHGEF12Q9NZN5 1544 aa-2.19□□□□□ -2.76
PRPF40A-207ENST00000471701 ITPR3Q14573 2671 aa-2.2□□□□□ -2.76
PRPF40A-207ENST00000471701 DBIP07108 87 aaKnown RBP-2.2□□□□□ -2.76
PRPF40A-207ENST00000471701 LINC00694P0DN24 101 aa-2.2□□□□□ -2.76
PRPF40A-207ENST00000471701 Q6AWC8 147 aa-2.2□□□□□ -2.76
PRPF40A-207ENST00000471701 SMIM15Q7Z3B0 74 aa-2.2□□□□□ -2.76
PRPF40A-207ENST00000471701 ARAP2Q8WZ64 1704 aa-2.2□□□□□ -2.76
PRPF40A-207ENST00000471701 PI4KAP42356 2102 aa-2.21□□□□□ -2.76
PRPF40A-207ENST00000471701 SPEF2Q9C093 1822 aa-2.21□□□□□ -2.76
PRPF40A-207ENST00000471701 ZFHX3Q15911 3703 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 DISP2A7MBM2 1401 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 TRAV13-2A0A0B4J235 113 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 NBEAP1P0C6P0 100 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 ALX1Q15699 326 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 BAGE2Q86Y30 109 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 AQP10Q96PS8 301 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 KIAA0556O60303 1618 aa-2.22□□□□□ -2.76
PRPF40A-207ENST00000471701 POLA1P09884 1462 aaPredicted RBP-2.22□□□□□ -2.77
PRPF40A-207ENST00000471701 PATJQ8NI35 1801 aa-2.22□□□□□ -2.77
PRPF40A-207ENST00000471701 DOCK2Q92608 1830 aa-2.22□□□□□ -2.77
PRPF40A-207ENST00000471701 TULP4Q9NRJ4 1543 aa-2.22□□□□□ -2.77
PRPF40A-207ENST00000471701 PRG4Q92954 1404 aaPredicted RBP-2.23□□□□□ -2.77
PRPF40A-207ENST00000471701 SPANXCQ9NY87 97 aa-2.23□□□□□ -2.77
PRPF40A-207ENST00000471701 ZNF518AQ6AHZ1 1483 aa-2.23□□□□□ -2.77
PRPF40A-207ENST00000471701 RIMS1Q86UR5 1692 aaKnown RBP-2.23□□□□□ -2.77
PRPF40A-207ENST00000471701 UQCR11O14957 56 aa-2.24□□□□□ -2.77
PRPF40A-207ENST00000471701 TTC9CQ8N5M4 171 aa-2.24□□□□□ -2.77
PRPF40A-207ENST00000471701 SMIM3Q9BZL3 60 aa-2.24□□□□□ -2.77
PRPF40A-207ENST00000471701 HYDINQ4G0P3 5121 aa-2.24□□□□□ -2.77
PRPF40A-207ENST00000471701 DNAH9Q9NYC9 4486 aa-2.25□□□□□ -2.77
PRPF40A-207ENST00000471701 HMGXB3Q12766 1538 aa-2.25□□□□□ -2.77
PRPF40A-207ENST00000471701 F8VRH5 84 aa-2.25□□□□□ -2.77
PRPF40A-207ENST00000471701 DOPEY1Q5JWR5 2465 aa-2.26□□□□□ -2.77
PRPF40A-207ENST00000471701 TSPAN19P0C672 248 aa-2.26□□□□□ -2.77
PRPF40A-207ENST00000471701 DEFB112Q30KQ8 113 aa-2.26□□□□□ -2.77
PRPF40A-207ENST00000471701 SONP18583 2426 aaKnown RBP-2.26□□□□□ -2.77
PRPF40A-207ENST00000471701 SCIMPQ6UWF3 145 aa-2.27□□□□□ -2.77
PRPF40A-207ENST00000471701 NDUFA4L2Q9NRX3 87 aa-2.27□□□□□ -2.77
PRPF40A-207ENST00000471701 APLNQ9ULZ1 77 aa-2.27□□□□□ -2.77
PRPF40A-207ENST00000471701 ANKHD1Q8IWZ3 2542 aaKnown RBP-2.27□□□□□ -2.77
PRPF40A-207ENST00000471701 PPIP5K1Q6PFW1 1433 aa-2.27□□□□□ -2.77
PRPF40A-207ENST00000471701 SYS1-DBNDD2H3BUS1 97 aa-2.28□□□□□ -2.77
PRPF40A-207ENST00000471701 NCR2O95944 276 aa-2.28□□□□□ -2.77
PRPF40A-207ENST00000471701 APOC3P02656 99 aa-2.28□□□□□ -2.77
PRPF40A-207ENST00000471701 TRBV7-4A0A0J9YYF1 115 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 LINC00959A0A1B0GUT2 108 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 GNG14A0A1W2PPG7 69 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 IGLC7A0M8Q6 106 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 NEFHP12036 1026 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 TPPP2P59282 170 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 TAC4Q86UU9 113 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 MAFIPQ8WZ33 124 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 FMN2Q9NZ56 1722 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 BTAF1O14981 1849 aa-2.29□□□□□ -2.78
PRPF40A-207ENST00000471701 RAPGEF6Q8TEU7 1601 aa-2.3□□□□□ -2.78
PRPF40A-207ENST00000471701 SPRR2FQ96RM1 72 aa-2.3□□□□□ -2.78
PRPF40A-207ENST00000471701 LINC01558Q9Y6Z2 57 aa-2.3□□□□□ -2.78
PRPF40A-207ENST00000471701 BIRC6Q9NR09 4857 aa-2.3□□□□□ -2.78
PRPF40A-207ENST00000471701 SHANK2Q9UPX8 1470 aa-2.31□□□□□ -2.78
PRPF40A-207ENST00000471701 J3QR89 54 aa-2.31□□□□□ -2.78
PRPF40A-207ENST00000471701 K7ERU9 68 aa-2.31□□□□□ -2.78
PRPF40A-207ENST00000471701 SPANXA1Q9NS26 97 aa-2.31□□□□□ -2.78
PRPF40A-207ENST00000471701 PRRC2CQ9Y520 2896 aaKnown RBP-2.31□□□□□ -2.78
PRPF40A-207ENST00000471701 FASNP49327 2511 aaKnown RBP-2.32□□□□□ -2.78
PRPF40A-207ENST00000471701 KCNRGQ8N5I3 272 aa-2.32□□□□□ -2.78
PRPF40A-207ENST00000471701 SPG11Q96JI7 2443 aa-2.32□□□□□ -2.78
PRPF40A-207ENST00000471701 LYSTQ99698 3801 aa-2.33□□□□□ -2.78
PRPF40A-207ENST00000471701 COX8AP10176 69 aa-2.33□□□□□ -2.78
PRPF40A-207ENST00000471701 FHAD1B1AJZ9 1412 aa-2.34□□□□□ -2.78
PRPF40A-207ENST00000471701 M0R2Z0 102 aa-2.34□□□□□ -2.78
PRPF40A-207ENST00000471701 GUCA1AP43080 201 aaPredicted RBP-2.34□□□□□ -2.78
PRPF40A-207ENST00000471701 AKAP13Q12802 2813 aa-2.35□□□□□ -2.79
PRPF40A-207ENST00000471701 MYO18BQ8IUG5 2567 aa-2.35□□□□□ -2.79
PRPF40A-207ENST00000471701 C10orf113Q5VZT2 155 aa-2.35□□□□□ -2.79
PRPF40A-207ENST00000471701 TSLPQ969D9 159 aa-2.35□□□□□ -2.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms