RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 VPS13DQ5THJ4 4388 aa6.87□□□□□ -1.31
UPF2-204ENST00000460569 IBA57-AS1B1ANH7 110 aa6.86□□□□□ -1.31
UPF2-204ENST00000460569 LINC00310P59036 64 aa6.86□□□□□ -1.31
UPF2-204ENST00000460569 RNASE13Q5GAN3 156 aaKnown RBP6.86□□□□□ -1.31
UPF2-204ENST00000460569 TOMM6Q96B49 74 aa6.86□□□□□ -1.31
UPF2-204ENST00000460569 CSDC2Q9Y534 153 aaKnown RBP6.86□□□□□ -1.31
UPF2-204ENST00000460569 A0A096LNJ9 63 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 IGKV3OR2-268A0A0C4DH90 116 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 LINC01549A6NIU2 74 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 REG3AQ06141 175 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 ZNF664Q8N3J9 261 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 SCGB3A1Q96QR1 104 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 OPRPNQ99935 248 aaPredicted RBP6.85□□□□□ -1.31
UPF2-204ENST00000460569 CDC42SE2Q9NRR3 84 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 PYGO1Q9Y3Y4 419 aa6.85□□□□□ -1.31
UPF2-204ENST00000460569 DNAH1Q9P2D7 4330 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 IGLV4-3A0A075B6K6 122 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 TRAV8-3A0A0A6YYJ7 113 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 NDUFA6P56556 154 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 MRPS36P82909 103 aaKnown RBP6.84□□□□□ -1.31
UPF2-204ENST00000460569 ENHOQ6UWT2 76 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 Q6ZN92 141 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 ERASQ7Z444 233 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 C6orf223Q8N319 242 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 FAM19A2Q8N3H0 131 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 PRR34Q9NV39 138 aa6.84□□□□□ -1.31
UPF2-204ENST00000460569 IGIPA6NJ69 53 aa6.83□□□□□ -1.32
UPF2-204ENST00000460569 NUPR1O60356 82 aa6.83□□□□□ -1.32
UPF2-204ENST00000460569 MIAQ16674 131 aa6.83□□□□□ -1.32
UPF2-204ENST00000460569 C1orf134Q5TEV5 83 aa6.83□□□□□ -1.32
UPF2-204ENST00000460569 RMI2Q96E14 147 aa6.83□□□□□ -1.32
UPF2-204ENST00000460569 TMEM141Q96I45 108 aa6.83□□□□□ -1.32
UPF2-204ENST00000460569 TIMM17AQ99595 171 aa6.83□□□□□ -1.32
UPF2-204ENST00000460569 IGLV10-54A0A075B6I4 117 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 IGKV2D-24A0A075B6R9 120 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 IFITM10A6NMD0 228 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 NPSP0C0P6 89 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 PDZD11Q5EBL8 140 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 TEX43Q6ZNM6 134 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 NFE4Q86UQ8 179 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 FAM104AQ969W3 186 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 C1orf43Q9BWL3 253 aa6.82□□□□□ -1.32
UPF2-204ENST00000460569 TRAV13-1A0A0B4J241 112 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.81□□□□□ -1.32
UPF2-204ENST00000460569 ATP5LO75964 103 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 SS18Q15532 418 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 COA6Q5JTJ3 125 aaKnown RBP6.81□□□□□ -1.32
UPF2-204ENST00000460569 PAPPA-AS1Q5QFB9 102 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 ZC2HC1BQ5TFG8 222 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 C2orf88Q9BSF0 95 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 TM2D2Q9BX73 214 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 VCX2Q9H322 139 aa6.81□□□□□ -1.32
UPF2-204ENST00000460569 TRAV8-4A0A0B4J246 113 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 LINC00959A0A1B0GUT2 108 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 PSCAO43653 123 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 LEPROTL1O95214 131 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 S100A6P06703 90 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 LINC00173Q6ZV60 143 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 BAALCQ8WXS3 180 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 CHCHD10Q8WYQ3 142 aaPredicted RBP6.8□□□□□ -1.32
UPF2-204ENST00000460569 SACSQ9NZJ4 4579 aa6.8□□□□□ -1.32
UPF2-204ENST00000460569 CCL25O15444 150 aa6.79□□□□□ -1.32
UPF2-204ENST00000460569 FABP4P15090 132 aa6.79□□□□□ -1.32
UPF2-204ENST00000460569 XCL1P47992 114 aa6.79□□□□□ -1.32
UPF2-204ENST00000460569 Q6ZRN7 208 aaPredicted RBP6.79□□□□□ -1.32
UPF2-204ENST00000460569 IFI27L1Q96BM0 104 aa6.79□□□□□ -1.32
UPF2-204ENST00000460569 AMELXQ99217 191 aa6.79□□□□□ -1.32
UPF2-204ENST00000460569 COX11Q9Y6N1 276 aa6.79□□□□□ -1.32
UPF2-204ENST00000460569 KMT2CQ8NEZ4 4911 aaKnown RBP6.78□□□□□ -1.32
UPF2-204ENST00000460569 GAGE12HA6NDE8 117 aa6.78□□□□□ -1.32
UPF2-204ENST00000460569 RTL8CO15255 209 aa6.78□□□□□ -1.32
UPF2-204ENST00000460569 PMVKQ15126 192 aa6.78□□□□□ -1.32
UPF2-204ENST00000460569 HSPB8Q9UJY1 196 aa6.78□□□□□ -1.32
UPF2-204ENST00000460569 DNAH6Q9C0G6 4158 aa6.78□□□□□ -1.32
UPF2-204ENST00000460569 KMT2AQ03164 3969 aa6.77□□□□□ -1.32
UPF2-204ENST00000460569 H0Y8G0 127 aa6.77□□□□□ -1.33
UPF2-204ENST00000460569 PRSS1P07477 247 aa6.77□□□□□ -1.33
UPF2-204ENST00000460569 UBE2D1P51668 147 aa6.77□□□□□ -1.33
UPF2-204ENST00000460569 KRTAP26-1Q6PEX3 210 aa6.77□□□□□ -1.33
UPF2-204ENST00000460569 CST9LQ9H4G1 147 aa6.77□□□□□ -1.33
UPF2-204ENST00000460569 TMA7Q9Y2S6 64 aaKnown RBP6.77□□□□□ -1.33
UPF2-204ENST00000460569 PRSS29PA6NIE9 313 aa6.76□□□□□ -1.33
UPF2-204ENST00000460569 CD164L2Q6UWJ8 174 aa6.76□□□□□ -1.33
UPF2-204ENST00000460569 A0A0J9YXV3 536 aa6.75□□□□□ -1.33
UPF2-204ENST00000460569 LECT2O14960 151 aa6.75□□□□□ -1.33
UPF2-204ENST00000460569 S100A2P29034 98 aa6.75□□□□□ -1.33
UPF2-204ENST00000460569 SNRPEP62304 92 aaKnown RBP6.75□□□□□ -1.33
UPF2-204ENST00000460569 FOXI1Q12951 378 aa6.75□□□□□ -1.33
UPF2-204ENST00000460569 LINC00242Q5T6M2 205 aa6.75□□□□□ -1.33
UPF2-204ENST00000460569 HIST3H2BBQ8N257 126 aa6.75□□□□□ -1.33
UPF2-204ENST00000460569 MAPKAPK5-AS1Q8N8E1 139 aa6.75□□□□□ -1.33
UPF2-204ENST00000460569 PACRGQ96M98 296 aaPredicted RBP6.75□□□□□ -1.33
UPF2-204ENST00000460569 GEMIN7Q9H840 131 aaKnown RBP6.75□□□□□ -1.33
UPF2-204ENST00000460569 SEC11AP67812 179 aa6.74□□□□□ -1.33
UPF2-204ENST00000460569 TNP2Q05952 138 aa6.74□□□□□ -1.33
UPF2-204ENST00000460569 LINC00336Q6ZUF6 198 aa6.74□□□□□ -1.33
UPF2-204ENST00000460569 MAP1LC3CQ9BXW4 147 aa6.74□□□□□ -1.33
UPF2-204ENST00000460569 TRAV12-1A0A0B4J245 112 aa6.73□□□□□ -1.33
UPF2-204ENST00000460569 TINCRA0A1B0GVN0 87 aa6.73□□□□□ -1.33
UPF2-204ENST00000460569 COX7A2LO14548 114 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms