RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 ATP6V0E1O15342 81 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 ANKRD17O75179 2603 aaKnown RBP2.54□□□□□ -2
SYNE1-212ENST00000423061 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.54□□□□□ -2
SYNE1-212ENST00000423061 IGKV2-29A2NJV5 120 aaPredicted RBP2.54□□□□□ -2
SYNE1-212ENST00000423061 GNLYP22749 145 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 IGLV4-69A0A075B6H9 119 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 OVOL3O00110 214 aa2.54□□□□□ -2
SYNE1-212ENST00000423061 FAM222AQ5U5X8 452 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 RAI1Q7Z5J4 1906 aaPredicted RBP2.53□□□□□ -2
SYNE1-212ENST00000423061 IGHV3-38A0A0C4DH36 116 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 LYPD5Q6UWN5 251 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 TECTAO75443 2155 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 SUMO4Q6EEV6 95 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 FP248Q71RG6 208 aaPredicted RBP2.53□□□□□ -2
SYNE1-212ENST00000423061 ZFAND3Q9H8U3 227 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 IGHV1-69P01742 117 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 ADORA2A-AS1P86434 159 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 E7EUB6 86 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 IGHV1-58A0A0C4DH39 117 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 BPY2O14599 106 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 KLK9Q9UKQ9 250 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 IGHV4-4A0A075B6R2 117 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 IGIPA6NJ69 53 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 IGLV1-44P01699 117 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 LINC00269Q8N2A0 174 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 Q6ZSR3 168 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 Q9UF83 564 aa2.53□□□□□ -2
SYNE1-212ENST00000423061 TRBV6-1A0A0K0K1D8 114 aa2.53□□□□□ -2.01
SYNE1-212ENST00000423061 NDUFC1O43677 76 aa2.53□□□□□ -2.01
SYNE1-212ENST00000423061 C22orf34Q6ZV56 151 aa2.53□□□□□ -2.01
SYNE1-212ENST00000423061 LINC00308Q8TCZ7 52 aa2.53□□□□□ -2.01
SYNE1-212ENST00000423061 ATP5EP56381 51 aaPredicted RBP2.53□□□□□ -2.01
SYNE1-212ENST00000423061 IGHV4-28A0A0C4DH34 117 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 A8MUN3 132 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 K7EMT4 169 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 UBE2D4Q9Y2X8 147 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 FN1P02751 2386 aaKnown RBP2.52□□□□□ -2.01
SYNE1-212ENST00000423061 NREPQ16612 68 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 NDUFA4O00483 81 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 C17orf58Q2M2W7 97 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 UBE2AP49459 152 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 H7BZZ5 65 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 ESRGQ1W209 222 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 A0A087WYN8 130 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 BEAN1Q3B7T3 259 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 TSHBP01222 138 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 K7ENP7 123 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 MED14OSP0DP75 135 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 SPINK13Q1W4C9 94 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 LY6LH3BQJ8 138 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 RHPN1-AS1Q9BWJ2 59 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 IGLV3-9A0A075B6K5 115 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 UBE2BP63146 152 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 SND1-IT1Q9HBX3 110 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 LYNX1G3V0Z9 82 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 LYNX1P0DP58 116 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 K7EIM0 57 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 LHBP01229 141 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 UBE2E2Q96LR5 201 aa2.52□□□□□ -2.01
SYNE1-212ENST00000423061 ZFYVE26Q68DK2 2539 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 TRBV10-1A0A0K0K1A3 114 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 ZNF491Q8N8L2 437 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 PTPRBP23467 1997 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 FSTL3O95633 263 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 LINC01546A6NGU7 62 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 PRR3P79522 188 aaKnown RBP2.51□□□□□ -2.01
SYNE1-212ENST00000423061 H3BUX3 64 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 HOXB4P17483 251 aaPredicted RBP2.51□□□□□ -2.01
SYNE1-212ENST00000423061 IGLV2-23P01705 113 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 CDK2AP2O75956 126 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 FAM218AQ96MZ4 157 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 AMELXQ99217 191 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 IGLV2-18A0A075B6J9 118 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 LY6G6EA0A0G2JKS1 128 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 CMC4P56277 68 aaPredicted RBP2.51□□□□□ -2.01
SYNE1-212ENST00000423061 U3KQA8 63 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 H3BUA1 57 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 DSCR9P59020 149 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 Q8N2B8 174 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 CCL24O00175 119 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 HIGD2BQ4VC39 106 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 GPHB5Q86YW7 130 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 DEFB105AQ8NG35 78 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 FAM30AQ9NZY2 134 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 Q8N9L7 120 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 SMIM11BQ8TCY0 68 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 NKAPP1Q8N9T2 125 aa2.51□□□□□ -2.01
SYNE1-212ENST00000423061 IGHV3-53P01767 116 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 Q8N6K4 173 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 IGHV7-4-1A0A0J9YVY3 117 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 TMEM105Q8N8V8 129 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 CELA1Q9UNI1 258 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 IGFL3Q6UXB1 125 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 H0YGX0 51 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 K7EQD1 137 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 LY6HO94772 140 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 I3L2K1 104 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 LYPD2Q6UXB3 125 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 H3BQ85 93 aa2.5□□□□□ -2.01
SYNE1-212ENST00000423061 TMEM254Q8TBM7 123 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms