RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 DDX60Q8IY21 1712 aaKnown RBP2.34□□□□□ -2.04
SF3B1-203ENST00000414174 LRP4O75096 1905 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 TRAV10A0A0B4J240 114 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 IGHV1-18A0A0C4DH31 117 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 A0A1W2PNM2 257 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 CLPSL1A2RUU4 121 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 PMS2P5A8MQ11 134 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 HIGD1CA8MV81 97 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 PANO1I0J062 215 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 PIN1P1O15428 100 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 DNAL4O96015 105 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 TFF1P04155 84 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 CISD3P0C7P0 127 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 FXYD6P3P58550 94 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 LINC00483Q53H64 154 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 KPRPQ5T749 579 aaPredicted RBP2.33□□□□□ -2.04
SF3B1-203ENST00000414174 FAM74A4Q5TZK3 123 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 KRTAP26-1Q6PEX3 210 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 SMIM29Q86T20 159 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 Q86TA4 180 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 Q8TAT8 98 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 Q9BRP9 147 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 GFRA4Q9GZZ7 299 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 ZNRD1Q9P1U0 126 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 LENEPQ9Y5L5 61 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.33□□□□□ -2.04
SF3B1-203ENST00000414174 UBR3Q6ZT12 1888 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 MYO16Q9Y6X6 1858 aa2.33□□□□□ -2.04
SF3B1-203ENST00000414174 LCTP09848 1927 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 DOT1LQ8TEK3 1739 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 DLEC1Q9Y238 1755 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 TRAV12-1A0A0B4J245 112 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 TRBV10-1A0A0K0K1A3 114 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 ODF3BA8MYP8 253 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 GAS8-AS1O95177 125 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 IGLV1-44P01699 117 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 COX6B1P14854 86 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 KRTAP10-12P60413 245 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 CSAG1Q6PB30 78 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 SPANXA2-OT1Q8N9U9 137 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 Q8NAQ8 132 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 AMELXQ99217 191 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 PRR15LQ9BU68 103 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 LINC00846Q9NV44 126 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 PLAC8Q9NZF1 115 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 TMEM14AQ9Y6G1 99 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 SIP14410 1827 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 PLXNB1O43157 2135 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 MED13Q9UHV7 2174 aa2.32□□□□□ -2.04
SF3B1-203ENST00000414174 COL11A1P12107 1806 aaPredicted RBP2.31□□□□□ -2.04
SF3B1-203ENST00000414174 LAMA4Q16363 1823 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 IGKV3D-11A0A0A0MRZ8 115 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 IGHV3-64DA0A0J9YX35 117 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 A0A0J9YY99 117 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 TRBV6-5A0A0K0K1A5 114 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 LCE6AA0A183 80 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 CNBPP62633 177 aaKnown RBP2.31□□□□□ -2.04
SF3B1-203ENST00000414174 C1orf137Q5JT78 98 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 ZNF833PQ6ZTB9 187 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 C14orf178Q8N769 122 aaPredicted RBP2.31□□□□□ -2.04
SF3B1-203ENST00000414174 UBALD1Q8TB05 177 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 ORMDL1Q9P0S3 153 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 LHFPL6Q9Y693 200 aa2.31□□□□□ -2.04
SF3B1-203ENST00000414174 PTPRSQ13332 1948 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 GON4LQ3T8J9 2241 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 A0A1B0GUT8 65 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 H3BQ85 93 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 LINC01565O15544 149 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 P0C879 139 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 NREPQ16612 68 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 DEFB113Q30KQ7 82 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 Q6ZS52 159 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 KLHL30-AS1Q8NEE0 82 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 LINC00167Q96N53 147 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 PRR34Q9NV39 138 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 LINC01558Q9Y6Z2 57 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 TIAM2Q8IVF5 1701 aa2.3□□□□□ -2.04
SF3B1-203ENST00000414174 TDRD6O60522 2096 aaKnown RBP2.3□□□□□ -2.04
SF3B1-203ENST00000414174 ZNF407Q9C0G0 2248 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 MUC4Q99102 2169 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 NRAPQ86VF7 1730 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 IGLV7-46A0A075B6I9 117 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 IGHV3-64A0A075B6Q5 118 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 A0A1B0GUV1 79 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 SPINK4O60575 86 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 NDUFB1O75438 58 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 PPP1R17O96001 155 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 IGHV3-53P01767 116 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 Q8N377 158 aa2.29□□□□□ -2.04
SF3B1-203ENST00000414174 LMO7Q8WWI1 1683 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 LRRC37A3O60309 1634 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 IGLV2-18A0A075B6J9 118 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 TRBV6-6A0A0A6YYG2 114 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 A0A0J9YX75 114 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 IGIPA6NJ69 53 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 F8VRH5 84 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 SPAG11BQ08648 103 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 Q1RN00 199 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 KRTAP24-1Q3LI83 254 aa2.28□□□□□ -2.04
SF3B1-203ENST00000414174 SPAG11AQ6PDA7 123 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms