RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 LINC00526Q96FQ7 95 aa6.74□□□□□ -1.33
LIMCH1-202ENST00000381753 BAALC-AS2P0C853 105 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 SMIM20Q8N5G0 67 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 PPDPFLQ8WWR9 84 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 E7EUB6 86 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 CFAP126Q5VTH2 177 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 MRPL35Q9NZE8 188 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 NBDYA0A0U1RRE5 68 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 COLCA2A8K830 154 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 RTL8CO15255 209 aa6.73□□□□□ -1.33
LIMCH1-202ENST00000381753 Q6ZSN1 163 aa6.72□□□□□ -1.33
LIMCH1-202ENST00000381753 A0A0J9YXV3 536 aa6.72□□□□□ -1.33
LIMCH1-202ENST00000381753 LGALS9CQ6DKI2 356 aa6.72□□□□□ -1.33
LIMCH1-202ENST00000381753 C20orf173Q96LM9 149 aa6.72□□□□□ -1.33
LIMCH1-202ENST00000381753 C1orf147Q96MC9 270 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-202ENST00000381753 ANKRD39Q53RE8 183 aa6.72□□□□□ -1.33
LIMCH1-202ENST00000381753 IFITM1P13164 125 aa6.71□□□□□ -1.33
LIMCH1-202ENST00000381753 LIMD2Q9BT23 127 aa6.71□□□□□ -1.33
LIMCH1-202ENST00000381753 SPTBN4Q9H254 2564 aa6.71□□□□□ -1.34
LIMCH1-202ENST00000381753 C2orf48Q96LS8 159 aa6.71□□□□□ -1.34
LIMCH1-202ENST00000381753 GATA1P15976 413 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-202ENST00000381753 LINC01620Q4KN68 170 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 C18orf32Q8TCD1 76 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 MED12LQ86YW9 2145 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 K7EIL1 84 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 LINC01545Q5VT33 79 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 Q8N6K4 173 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 B5MCH6 92 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 COX6A2Q02221 97 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 Q6ZUT4 128 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 CHCHD7Q9BUK0 85 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 HEATR5AQ86XA9 2040 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 MTORP42345 2549 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 CEND1Q8N111 149 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 MIR7-3HGQ8N6C7 128 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 NEXN-AS1Q8NBZ9 246 aa6.7□□□□□ -1.34
LIMCH1-202ENST00000381753 ASPHD1Q5U4P2 390 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 CD164L2Q6UWJ8 174 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 CDIP1Q9H305 208 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 TRBV10-2A0A0K0K1G8 114 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 RPL39P62891 51 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 F8P00451 2351 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 CYYR1Q96J86 154 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 LINC00574Q9H8X3 128 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 PRYO14603 147 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 C11orf52Q96A22 123 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 CFC1BP0CG36 223 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 CFC1P0CG37 223 aa6.69□□□□□ -1.34
LIMCH1-202ENST00000381753 SMIM27A0A1W2PRY6 76 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 LINC00467Q9BRT7 94 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 UPK3BQ9BT76 320 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 ARHGAP21Q5T5U3 1957 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 F8W1H4 67 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 CTRLP40313 264 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 MUSTN1Q8IVN3 82 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 SPANXCQ9NY87 97 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 DOCK11Q5JSL3 2073 aa6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 NCOA6Q14686 2063 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-202ENST00000381753 SMR3BP02814 79 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-202ENST00000381753 WFDC10BQ8IUB3 73 aa6.67□□□□□ -1.34
LIMCH1-202ENST00000381753 SLPIP03973 132 aa6.67□□□□□ -1.34
LIMCH1-202ENST00000381753 ACYP1P07311 99 aa6.67□□□□□ -1.34
LIMCH1-202ENST00000381753 Q6ZVH6 145 aa6.67□□□□□ -1.34
LIMCH1-202ENST00000381753 PATE2Q6UY27 113 aa6.67□□□□□ -1.34
LIMCH1-202ENST00000381753 LINC00315P59091 139 aa6.67□□□□□ -1.34
LIMCH1-202ENST00000381753 POLQO75417 2590 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 C9orf118A6NHY6 69 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 JMJD7-PLA2G4BH0Y9G9 81 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 PRM2P04554 102 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 C10orf25Q5T742 122 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 LYPD5Q6UWN5 251 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 FLNBO75369 2602 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 K7EP13 123 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 DAND5Q8N907 189 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 NTN5Q8WTR8 489 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 ZFAND3Q9H8U3 227 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 KIAA1549LQ6ZVL6 1849 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 X6R8D5 127 aa6.66□□□□□ -1.34
LIMCH1-202ENST00000381753 COX8AP10176 69 aa6.65□□□□□ -1.34
LIMCH1-202ENST00000381753 Q8N2B8 174 aa6.65□□□□□ -1.34
LIMCH1-202ENST00000381753 IGLC2P0DOY2 106 aa6.65□□□□□ -1.34
LIMCH1-202ENST00000381753 IGLC3P0DOY3 106 aa6.65□□□□□ -1.34
LIMCH1-202ENST00000381753 V9GYV3 84 aa6.65□□□□□ -1.34
LIMCH1-202ENST00000381753 EGFEM1PQ0D2K5 195 aa6.65□□□□□ -1.35
LIMCH1-202ENST00000381753 C12orf74Q32Q52 190 aa6.65□□□□□ -1.35
LIMCH1-202ENST00000381753 RNASE8Q8TDE3 154 aaKnown RBP6.65□□□□□ -1.35
LIMCH1-202ENST00000381753 M0R378 163 aa6.64□□□□□ -1.35
LIMCH1-202ENST00000381753 TYMSOSQ8TAI1 123 aa6.64□□□□□ -1.35
LIMCH1-202ENST00000381753 DHRS4-AS1Q9P1J3 65 aa6.64□□□□□ -1.35
LIMCH1-202ENST00000381753 PDE6GP18545 87 aa6.64□□□□□ -1.35
LIMCH1-202ENST00000381753 DCANP1Q8TF63 244 aa6.64□□□□□ -1.35
LIMCH1-202ENST00000381753 KMT2EQ8IZD2 1858 aa6.64□□□□□ -1.35
LIMCH1-202ENST00000381753 CELA1Q9UNI1 258 aa6.64□□□□□ -1.35
LIMCH1-202ENST00000381753 TMEM256-PLSCR3K7ERE1 68 aa6.63□□□□□ -1.35
LIMCH1-202ENST00000381753 MAPKAPK5-AS1Q8N8E1 139 aa6.63□□□□□ -1.35
LIMCH1-202ENST00000381753 C20orf203Q8NBC4 194 aa6.63□□□□□ -1.35
LIMCH1-202ENST00000381753 SPACA4Q8TDM5 124 aa6.63□□□□□ -1.35
LIMCH1-202ENST00000381753 USP9XQ93008 2570 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-202ENST00000381753 A0A0U1RQV1 116 aa6.63□□□□□ -1.35
LIMCH1-202ENST00000381753 Q6ZRP5 223 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms