RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 CRYBA4P53673 196 aa11.14□□□□□ -0.63
CCDC40-202ENST00000374876 CEMP1Q6PRD7 247 aaPredicted RBP11.14□□□□□ -0.63
CCDC40-202ENST00000374876 NACAE9PAV3 2078 aa11.13□□□□□ -0.63
CCDC40-202ENST00000374876 CMC4P56277 68 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-202ENST00000374876 AMELXQ99217 191 aa11.13□□□□□ -0.63
CCDC40-202ENST00000374876 CHCHD7Q9BUK0 85 aa11.13□□□□□ -0.63
CCDC40-202ENST00000374876 SPANXB1Q9NS25 103 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-202ENST00000374876 SPANXA1Q9NS26 97 aa11.13□□□□□ -0.63
CCDC40-202ENST00000374876 TRGV1A0A0A0MS02 117 aa11.13□□□□□ -0.63
CCDC40-202ENST00000374876 COTL1Q14019 142 aa11.13□□□□□ -0.63
CCDC40-202ENST00000374876 SLC25A29Q8N8R3 303 aa11.13□□□□□ -0.63
CCDC40-202ENST00000374876 IGHV3-64A0A075B6Q5 118 aa11.12□□□□□ -0.63
CCDC40-202ENST00000374876 IGHV3-38A0A0C4DH36 116 aa11.12□□□□□ -0.63
CCDC40-202ENST00000374876 FAM104AQ969W3 186 aa11.12□□□□□ -0.63
CCDC40-202ENST00000374876 PRKDCP78527 4128 aaKnown RBP11.12□□□□□ -0.63
CCDC40-202ENST00000374876 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-202ENST00000374876 IGKV2-29A2NJV5 120 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-202ENST00000374876 IL17DQ8TAD2 202 aa11.11□□□□□ -0.63
CCDC40-202ENST00000374876 UBE2D4Q9Y2X8 147 aa11.11□□□□□ -0.63
CCDC40-202ENST00000374876 IGHV4-30-4P0DP06 118 aa11.11□□□□□ -0.63
CCDC40-202ENST00000374876 UBE2D1P51668 147 aa11.11□□□□□ -0.63
CCDC40-202ENST00000374876 MRPS36P82909 103 aaKnown RBP11.11□□□□□ -0.63
CCDC40-202ENST00000374876 RNASE13Q5GAN3 156 aaKnown RBP11.11□□□□□ -0.63
CCDC40-202ENST00000374876 C19orf73Q9NVV2 129 aa11.11□□□□□ -0.63
CCDC40-202ENST00000374876 PGPEP1Q9NXJ5 209 aa11.11□□□□□ -0.63
CCDC40-202ENST00000374876 TMEM263Q8WUH6 116 aaKnown RBP11.1□□□□□ -0.63
CCDC40-202ENST00000374876 IGHV3-30P01768 117 aa11.09□□□□□ -0.63
CCDC40-202ENST00000374876 IGHV3-30-5P0DP03 117 aa11.09□□□□□ -0.63
CCDC40-202ENST00000374876 VPS25Q9BRG1 176 aa11.09□□□□□ -0.63
CCDC40-202ENST00000374876 APOMO95445 188 aa11.09□□□□□ -0.63
CCDC40-202ENST00000374876 TIMM21Q9BVV7 248 aa11.09□□□□□ -0.63
CCDC40-202ENST00000374876 H3BMG7 143 aa11.08□□□□□ -0.64
CCDC40-202ENST00000374876 Q6ZTI0 123 aa11.08□□□□□ -0.64
CCDC40-202ENST00000374876 TINCRA0A1B0GVN0 87 aa11.07□□□□□ -0.64
CCDC40-202ENST00000374876 IGHV3-30-3P0DP02 117 aa11.07□□□□□ -0.64
CCDC40-202ENST00000374876 Q6ZUT4 128 aa11.07□□□□□ -0.64
CCDC40-202ENST00000374876 F8W1H4 67 aa11.06□□□□□ -0.64
CCDC40-202ENST00000374876 FAM110AQ9BQ89 295 aa11.06□□□□□ -0.64
CCDC40-202ENST00000374876 TSPAN13O95857 204 aa11.06□□□□□ -0.64
CCDC40-202ENST00000374876 RPL35AP18077 110 aaKnown RBP11.06□□□□□ -0.64
CCDC40-202ENST00000374876 DGAT2L7PQ6IED9 249 aa11.06□□□□□ -0.64
CCDC40-202ENST00000374876 NOP10Q9NPE3 64 aaKnown RBP11.06□□□□□ -0.64
CCDC40-202ENST00000374876 TRAV4A0A0B4J268 109 aa11.05□□□□□ -0.64
CCDC40-202ENST00000374876 TRBV10-1A0A0K0K1A3 114 aa11.05□□□□□ -0.64
CCDC40-202ENST00000374876 TMEM238C9JI98 176 aa11.05□□□□□ -0.64
CCDC40-202ENST00000374876 K7EQD1 137 aa11.05□□□□□ -0.64
CCDC40-202ENST00000374876 GIG44P09565 113 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-202ENST00000374876 RPL36AP83881 106 aaKnown RBP11.05□□□□□ -0.64
CCDC40-202ENST00000374876 SBSPONQ8IVN8 264 aa11.05□□□□□ -0.64
CCDC40-202ENST00000374876 RPL36ALQ969Q0 106 aaKnown RBP11.05□□□□□ -0.64
CCDC40-202ENST00000374876 IGHV1-58A0A0C4DH39 117 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 A8MZ25 164 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 RPL24P83731 157 aaKnown RBP11.04□□□□□ -0.64
CCDC40-202ENST00000374876 C10orf126Q8N4M7 172 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 GEMIN7Q9H840 131 aaKnown RBP11.04□□□□□ -0.64
CCDC40-202ENST00000374876 TRAV8-3A0A0A6YYJ7 113 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 CFC1BP0CG36 223 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 CFC1P0CG37 223 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 DAZ2Q13117 558 aaKnown RBP11.04□□□□□ -0.64
CCDC40-202ENST00000374876 C16orf74Q96GX8 76 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 B9D2Q9BPU9 175 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 C1QTNF4Q9BXJ3 329 aa11.04□□□□□ -0.64
CCDC40-202ENST00000374876 LOC107984156A0A0G2JMH3 177 aa11.03□□□□□ -0.64
CCDC40-202ENST00000374876 A0A0J9YXY3 114 aa11.03□□□□□ -0.64
CCDC40-202ENST00000374876 GAGE13Q4V321 117 aa11.03□□□□□ -0.64
CCDC40-202ENST00000374876 ARL17AQ8IVW1 177 aa11.03□□□□□ -0.64
CCDC40-202ENST00000374876 DAZ4Q86SG3 579 aaKnown RBP11.02□□□□□ -0.64
CCDC40-202ENST00000374876 VSIG2Q96IQ7 327 aa11.02□□□□□ -0.64
CCDC40-202ENST00000374876 DAZ3Q9NR90 486 aaKnown RBP11.02□□□□□ -0.64
CCDC40-202ENST00000374876 WFDC2Q14508 124 aa11.02□□□□□ -0.65
CCDC40-202ENST00000374876 LYRM7Q5U5X0 104 aa11.02□□□□□ -0.65
CCDC40-202ENST00000374876 SFTA2Q6UW10 78 aa11.02□□□□□ -0.65
CCDC40-202ENST00000374876 TGP01266 2768 aa11.02□□□□□ -0.65
CCDC40-202ENST00000374876 A4D1N5 150 aa11.01□□□□□ -0.65
CCDC40-202ENST00000374876 SPINK8P0C7L1 97 aa11.01□□□□□ -0.65
CCDC40-202ENST00000374876 PRO1854Q9UHT4 67 aa11.01□□□□□ -0.65
CCDC40-202ENST00000374876 TRGV2A0A075B6R0 118 aa11.01□□□□□ -0.65
CCDC40-202ENST00000374876 PCP4P48539 62 aa11.01□□□□□ -0.65
CCDC40-202ENST00000374876 MUSTN1Q8IVN3 82 aa11.01□□□□□ -0.65
CCDC40-202ENST00000374876 NDUFA12Q9UI09 145 aa11.01□□□□□ -0.65
CCDC40-202ENST00000374876 TEX48A0A1B0GUV7 120 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 GAGE12JA6NER3 117 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 GAGE7O76087 117 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 GAGE12FP0CL80 117 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 GAGE12GP0CL81 117 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 GAGE12IP0CL82 117 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 UBE2D3P61077 147 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 UBE2D2P62837 147 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 GAGE4Q13068 117 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 GAGE5Q13069 117 aa11□□□□□ -0.65
CCDC40-202ENST00000374876 PLAC8L1A1L4L8 177 aa10.99□□□□□ -0.65
CCDC40-202ENST00000374876 PSMB2P49721 201 aa10.99□□□□□ -0.65
CCDC40-202ENST00000374876 CSNK1G2-AS1Q8NCQ2 148 aa10.99□□□□□ -0.65
CCDC40-202ENST00000374876 TIRAPP58753 221 aa10.99□□□□□ -0.65
CCDC40-202ENST00000374876 MTURNQ8N3F0 131 aa10.99□□□□□ -0.65
CCDC40-202ENST00000374876 CDKN2A-AS1Q9UH64 79 aa10.99□□□□□ -0.65
CCDC40-202ENST00000374876 LINC00694P0DN24 101 aa10.98□□□□□ -0.65
CCDC40-202ENST00000374876 PRO0461Q9UI25 63 aa10.98□□□□□ -0.65
CCDC40-202ENST00000374876 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-202ENST00000374876 SMAGPQ0VAQ4 97 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms