RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 TECTAO75443 2155 aa11.77□□□□□ -0.52
COL17A1-202ENST00000369733 USP17L23D6RBM5 183 aa11.77□□□□□ -0.52
COL17A1-202ENST00000369733 UBE2D3P61077 147 aa11.77□□□□□ -0.52
COL17A1-202ENST00000369733 UBE2D2P62837 147 aa11.77□□□□□ -0.52
COL17A1-202ENST00000369733 CRIP2P52943 208 aaPredicted RBP11.77□□□□□ -0.53
COL17A1-202ENST00000369733 IGLV4-69A0A075B6H9 119 aa11.77□□□□□ -0.53
COL17A1-202ENST00000369733 DEFB135Q30KP9 77 aa11.77□□□□□ -0.53
COL17A1-202ENST00000369733 MRPL55Q7Z7F7 128 aaKnown RBP11.77□□□□□ -0.53
COL17A1-202ENST00000369733 NAV3Q8IVL0 2385 aa11.77□□□□□ -0.53
COL17A1-202ENST00000369733 BPY2O14599 106 aa11.76□□□□□ -0.53
COL17A1-202ENST00000369733 PSMG3-AS1Q96PY0 264 aa11.76□□□□□ -0.53
COL17A1-202ENST00000369733 MRPS36P82909 103 aaKnown RBP11.76□□□□□ -0.53
COL17A1-202ENST00000369733 DEFB114Q30KQ6 69 aa11.76□□□□□ -0.53
COL17A1-202ENST00000369733 SCXQ7RTU7 201 aa11.76□□□□□ -0.53
COL17A1-202ENST00000369733 POM121L12Q8N7R1 296 aa11.76□□□□□ -0.53
COL17A1-202ENST00000369733 WFDC11Q8NEX6 87 aa11.76□□□□□ -0.53
COL17A1-202ENST00000369733 REG3AQ06141 175 aa11.75□□□□□ -0.53
COL17A1-202ENST00000369733 C11orf71Q6IPW1 123 aa11.75□□□□□ -0.53
COL17A1-202ENST00000369733 TSPEAR-AS2P59090 65 aa11.74□□□□□ -0.53
COL17A1-202ENST00000369733 MPLKIPQ8TAP9 179 aa11.74□□□□□ -0.53
COL17A1-202ENST00000369733 CHCHD10Q8WYQ3 142 aaPredicted RBP11.74□□□□□ -0.53
COL17A1-202ENST00000369733 FAM240AA0A1B0GVK7 77 aa11.74□□□□□ -0.53
COL17A1-202ENST00000369733 C10orf99Q6UWK7 81 aa11.74□□□□□ -0.53
COL17A1-202ENST00000369733 CEP192Q8TEP8 1941 aa11.73□□□□□ -0.53
COL17A1-202ENST00000369733 A0A0U1RQV1 116 aa11.73□□□□□ -0.53
COL17A1-202ENST00000369733 M0QXV9 152 aa11.73□□□□□ -0.53
COL17A1-202ENST00000369733 COX8CQ7Z4L0 72 aa11.73□□□□□ -0.53
COL17A1-202ENST00000369733 TRBV6-8A0A0A6YYG3 113 aa11.73□□□□□ -0.53
COL17A1-202ENST00000369733 LINC00694P0DN24 101 aa11.72□□□□□ -0.53
COL17A1-202ENST00000369733 SMIM11BQ8TCY0 68 aa11.72□□□□□ -0.53
COL17A1-202ENST00000369733 C6orf99Q4VX62 202 aa11.72□□□□□ -0.53
COL17A1-202ENST00000369733 IGLV2-18A0A075B6J9 118 aa11.71□□□□□ -0.53
COL17A1-202ENST00000369733 NDUFB1O75438 58 aa11.71□□□□□ -0.53
COL17A1-202ENST00000369733 LRRC75A-AS1Q8N1F1 130 aa11.71□□□□□ -0.54
COL17A1-202ENST00000369733 NDUFC2-KCTD14E9PQ53 114 aa11.7□□□□□ -0.54
COL17A1-202ENST00000369733 C19orf84I3L1E1 186 aa11.7□□□□□ -0.54
COL17A1-202ENST00000369733 DCANP1Q8TF63 244 aa11.7□□□□□ -0.54
COL17A1-202ENST00000369733 Q6YL49 198 aa11.7□□□□□ -0.54
COL17A1-202ENST00000369733 TRBV6-4A0A1B0GX49 114 aa11.7□□□□□ -0.54
COL17A1-202ENST00000369733 PRM2P04554 102 aa11.69□□□□□ -0.54
COL17A1-202ENST00000369733 COL5A1P20908 1838 aaPredicted RBP11.68□□□□□ -0.54
COL17A1-202ENST00000369733 Q6ZSV7 163 aa11.68□□□□□ -0.54
COL17A1-202ENST00000369733 Q6JHZ5 121 aa11.68□□□□□ -0.54
COL17A1-202ENST00000369733 SPG11Q96JI7 2443 aa11.68□□□□□ -0.54
COL17A1-202ENST00000369733 F8W735 103 aaPredicted RBP11.67□□□□□ -0.54
COL17A1-202ENST00000369733 EP400Q96L91 3159 aa11.67□□□□□ -0.54
COL17A1-202ENST00000369733 ARHGAP32A7KAX9 2087 aa11.67□□□□□ -0.54
COL17A1-202ENST00000369733 DNAJC9-AS1A6NH13 148 aa11.67□□□□□ -0.54
COL17A1-202ENST00000369733 SNURFQ9Y675 71 aa11.67□□□□□ -0.54
COL17A1-202ENST00000369733 CCL18P55774 89 aa11.66□□□□□ -0.54
COL17A1-202ENST00000369733 PTPRQQ9UMZ3 2332 aa11.66□□□□□ -0.54
COL17A1-202ENST00000369733 FAM208BQ5VWN6 2430 aa11.66□□□□□ -0.54
COL17A1-202ENST00000369733 WNK1Q9H4A3 2382 aa11.65□□□□□ -0.54
COL17A1-202ENST00000369733 IGLV1-40P01703 118 aa11.65□□□□□ -0.54
COL17A1-202ENST00000369733 CDIP1Q9H305 208 aa11.64□□□□□ -0.55
COL17A1-202ENST00000369733 ADAMTSL4-AS1Q5T5F5 129 aa11.64□□□□□ -0.55
COL17A1-202ENST00000369733 XAGE1AQ9HD64 81 aa11.64□□□□□ -0.55
COL17A1-202ENST00000369733 CHKB-CPT1BH3BT56 60 aa11.63□□□□□ -0.55
COL17A1-202ENST00000369733 LINC00242Q5T6M2 205 aa11.63□□□□□ -0.55
COL17A1-202ENST00000369733 NDUFC1O43677 76 aa11.63□□□□□ -0.55
COL17A1-202ENST00000369733 ZNF580Q9UK33 172 aa11.63□□□□□ -0.55
COL17A1-202ENST00000369733 LOC100131303A0A0U1RQF7 123 aa11.63□□□□□ -0.55
COL17A1-202ENST00000369733 LINC00526Q96FQ7 95 aa11.63□□□□□ -0.55
COL17A1-202ENST00000369733 Q6ZQY7 126 aa11.62□□□□□ -0.55
COL17A1-202ENST00000369733 CDC42SE2Q9NRR3 84 aa11.62□□□□□ -0.55
COL17A1-202ENST00000369733 ATP5EP56381 51 aaPredicted RBP11.62□□□□□ -0.55
COL17A1-202ENST00000369733 TTC28Q96AY4 2481 aa11.62□□□□□ -0.55
COL17A1-202ENST00000369733 LYRM9A8MSI8 78 aa11.62□□□□□ -0.55
COL17A1-202ENST00000369733 UBE2AP49459 152 aa11.62□□□□□ -0.55
COL17A1-202ENST00000369733 CCKP06307 115 aa11.61□□□□□ -0.55
COL17A1-202ENST00000369733 EDN2P20800 178 aa11.61□□□□□ -0.55
COL17A1-202ENST00000369733 LINC00959A0A1B0GUT2 108 aa11.61□□□□□ -0.55
COL17A1-202ENST00000369733 SMIM9A6NGZ8 99 aa11.6□□□□□ -0.55
COL17A1-202ENST00000369733 C1orf195Q5TG92 126 aa11.6□□□□□ -0.55
COL17A1-202ENST00000369733 IGHV4-31P0DP07 118 aa11.6□□□□□ -0.55
COL17A1-202ENST00000369733 MRGPRG-AS1Q2M3A8 158 aa11.6□□□□□ -0.55
COL17A1-202ENST00000369733 H0Y9J4 135 aa11.6□□□□□ -0.55
COL17A1-202ENST00000369733 J3QKU1 62 aa11.6□□□□□ -0.55
COL17A1-202ENST00000369733 CHCHD7Q9BUK0 85 aa11.59□□□□□ -0.55
COL17A1-202ENST00000369733 SMIM1B2RUZ4 78 aa11.59□□□□□ -0.55
COL17A1-202ENST00000369733 ZNF702PQ9H963 129 aa11.59□□□□□ -0.55
COL17A1-202ENST00000369733 SHISA2Q6UWI4 295 aa11.59□□□□□ -0.55
COL17A1-202ENST00000369733 CD164L2Q6UWJ8 174 aa11.59□□□□□ -0.55
COL17A1-202ENST00000369733 A0A087WVE0 104 aa11.58□□□□□ -0.56
COL17A1-202ENST00000369733 COX6A2Q02221 97 aa11.58□□□□□ -0.56
COL17A1-202ENST00000369733 AMELXQ99217 191 aa11.58□□□□□ -0.56
COL17A1-202ENST00000369733 RPL28P46779 137 aaKnown RBP11.58□□□□□ -0.56
COL17A1-202ENST00000369733 BDP1A6H8Y1 2624 aa11.58□□□□□ -0.56
COL17A1-202ENST00000369733 DSCAMO60469 2012 aa11.57□□□□□ -0.56
COL17A1-202ENST00000369733 LINC01546A6NGU7 62 aa11.57□□□□□ -0.56
COL17A1-202ENST00000369733 C18orf65Q6ZTR6 163 aa11.57□□□□□ -0.56
COL17A1-202ENST00000369733 C3orf84H3BNL1 204 aa11.57□□□□□ -0.56
COL17A1-202ENST00000369733 SPTSSBQ8NFR3 76 aa11.57□□□□□ -0.56
COL17A1-202ENST00000369733 EXPH5Q8NEV8 1989 aa11.57□□□□□ -0.56
COL17A1-202ENST00000369733 BBC3Q96PG8 261 aaPredicted RBP11.57□□□□□ -0.56
COL17A1-202ENST00000369733 A0A087WYN8 130 aa11.55□□□□□ -0.56
COL17A1-202ENST00000369733 HRCT1Q6UXD1 115 aa11.55□□□□□ -0.56
COL17A1-202ENST00000369733 C1orf158Q8N1D5 194 aa11.55□□□□□ -0.56
COL17A1-202ENST00000369733 FAM19A3Q7Z5A8 133 aa11.55□□□□□ -0.56
COL17A1-202ENST00000369733 RETNQ9HD89 108 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms