RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 DSCAMO60469 2012 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 COX7BP24311 80 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 EBI3Q14213 229 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 PLXNB1O43157 2135 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 TIMM17BO60830 172 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 IGF1P05019 195 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 C11orf71Q6IPW1 123 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 URB1-AS1Q96HZ7 61 aa8.63□□□□□ -1.03
VPS39-201ENST00000318006 NRACQ8N912 160 aa8.62□□□□□ -1.03
VPS39-201ENST00000318006 C4orf3Q8WVX3 66 aa8.62□□□□□ -1.03
VPS39-201ENST00000318006 RANBP2P49792 3224 aaKnown RBP8.62□□□□□ -1.03
VPS39-201ENST00000318006 ODF3Q96PU9 254 aa8.62□□□□□ -1.03
VPS39-201ENST00000318006 SMIM9A6NGZ8 99 aa8.61□□□□□ -1.03
VPS39-201ENST00000318006 SLPIP03973 132 aa8.61□□□□□ -1.03
VPS39-201ENST00000318006 WFDC11Q8NEX6 87 aa8.61□□□□□ -1.03
VPS39-201ENST00000318006 HHLA3Q9XRX5 114 aa8.61□□□□□ -1.03
VPS39-201ENST00000318006 TIRAPP58753 221 aa8.61□□□□□ -1.03
VPS39-201ENST00000318006 PIK3CD-AS1Q5SR53 167 aa8.61□□□□□ -1.03
VPS39-201ENST00000318006 TMEM263Q8WUH6 116 aaKnown RBP8.61□□□□□ -1.03
VPS39-201ENST00000318006 LINC00467Q9BRT7 94 aa8.61□□□□□ -1.03
VPS39-201ENST00000318006 TRBV27A0A0K0K1C4 114 aa8.6□□□□□ -1.03
VPS39-201ENST00000318006 H7C423 109 aa8.6□□□□□ -1.03
VPS39-201ENST00000318006 HIVEP3Q5T1R4 2406 aa8.6□□□□□ -1.03
VPS39-201ENST00000318006 IBA57-AS1B1ANH7 110 aa8.6□□□□□ -1.03
VPS39-201ENST00000318006 M0QY20 66 aa8.6□□□□□ -1.03
VPS39-201ENST00000318006 FAM222AQ5U5X8 452 aa8.6□□□□□ -1.03
VPS39-201ENST00000318006 Q6ZS46 218 aa8.6□□□□□ -1.03
VPS39-201ENST00000318006 ZFAND2AQ8N6M9 145 aa8.59□□□□□ -1.03
VPS39-201ENST00000318006 PYGO1Q9Y3Y4 419 aa8.59□□□□□ -1.03
VPS39-201ENST00000318006 TRBV6-5A0A0K0K1A5 114 aa8.59□□□□□ -1.03
VPS39-201ENST00000318006 ZMAT4Q9H898 229 aa8.59□□□□□ -1.03
VPS39-201ENST00000318006 MYO9AB2RTY4 2548 aa8.59□□□□□ -1.03
VPS39-201ENST00000318006 C1orf195Q5TG92 126 aa8.59□□□□□ -1.04
VPS39-201ENST00000318006 ATG2AQ2TAZ0 1938 aa8.58□□□□□ -1.04
VPS39-201ENST00000318006 SCXQ7RTU7 201 aa8.58□□□□□ -1.04
VPS39-201ENST00000318006 HRCT1Q6UXD1 115 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 LINC00526Q96FQ7 95 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 DNAJC9-AS1A6NH13 148 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 Q6JHZ5 121 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 SMAD5-AS1Q9Y6J3 95 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 SMIM26A0A096LP01 95 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 SPART-AS1P0CW21 52 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 KIAA1549Q9HCM3 1950 aa8.57□□□□□ -1.04
VPS39-201ENST00000318006 IGHV4-31P0DP07 118 aa8.56□□□□□ -1.04
VPS39-201ENST00000318006 UBE2D1P51668 147 aa8.56□□□□□ -1.04
VPS39-201ENST00000318006 Q6YL49 198 aa8.56□□□□□ -1.04
VPS39-201ENST00000318006 SNURFQ9Y675 71 aa8.56□□□□□ -1.04
VPS39-201ENST00000318006 C20orf173Q96LM9 149 aa8.56□□□□□ -1.04
VPS39-201ENST00000318006 ZFAND3Q9H8U3 227 aa8.56□□□□□ -1.04
VPS39-201ENST00000318006 CNFNQ9BYD5 112 aa8.56□□□□□ -1.04
VPS39-201ENST00000318006 CEP295Q9C0D2 2601 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 MAP6D1Q9H9H5 199 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 GAS8-AS1O95177 125 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 LAMA3Q16787 3333 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 ABCA2Q9BZC7 2435 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 C2CD3Q4AC94 2353 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 UBE2D3P61077 147 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 UBE2D2P62837 147 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 MRPS36P82909 103 aaKnown RBP8.55□□□□□ -1.04
VPS39-201ENST00000318006 CHD9Q3L8U1 2897 aa8.55□□□□□ -1.04
VPS39-201ENST00000318006 K7EQG2 157 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 POLR2KP53803 58 aaKnown RBP8.54□□□□□ -1.04
VPS39-201ENST00000318006 KLK12Q9UKR0 248 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 HCFC1P51610 2035 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 EML5Q05BV3 1969 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 A8MZ25 164 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 Q8N6K4 173 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 ESM1Q9NQ30 184 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 COL4A2P08572 1712 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 FAM19A3Q7Z5A8 133 aa8.54□□□□□ -1.04
VPS39-201ENST00000318006 TSHBP01222 138 aa8.53□□□□□ -1.04
VPS39-201ENST00000318006 PRO0255Q9UI72 69 aa8.53□□□□□ -1.04
VPS39-201ENST00000318006 C11orf21Q9P2W6 132 aa8.53□□□□□ -1.04
VPS39-201ENST00000318006 SORL1Q92673 2214 aa8.53□□□□□ -1.04
VPS39-201ENST00000318006 C6orf99Q4VX62 202 aa8.52□□□□□ -1.05
VPS39-201ENST00000318006 SERP1Q9Y6X1 66 aa8.52□□□□□ -1.05
VPS39-201ENST00000318006 RNASE3P12724 160 aaKnown RBP8.52□□□□□ -1.05
VPS39-201ENST00000318006 Q6ZTI0 123 aa8.52□□□□□ -1.05
VPS39-201ENST00000318006 FAM19A5Q7Z5A7 132 aaPredicted RBP8.52□□□□□ -1.05
VPS39-201ENST00000318006 H0Y9J4 135 aa8.51□□□□□ -1.05
VPS39-201ENST00000318006 DEFB135Q30KP9 77 aa8.51□□□□□ -1.05
VPS39-201ENST00000318006 CDSNQ15517 529 aa8.51□□□□□ -1.05
VPS39-201ENST00000318006 CRIP2P52943 208 aaPredicted RBP8.51□□□□□ -1.05
VPS39-201ENST00000318006 TANC2Q9HCD6 1990 aa8.5□□□□□ -1.05
VPS39-201ENST00000318006 IGIPA6NJ69 53 aa8.5□□□□□ -1.05
VPS39-201ENST00000318006 DEFB114Q30KQ6 69 aa8.5□□□□□ -1.05
VPS39-201ENST00000318006 ZNF843Q8N446 348 aa8.5□□□□□ -1.05
VPS39-201ENST00000318006 LAMA2P24043 3122 aaKnown RBP8.49□□□□□ -1.05
VPS39-201ENST00000318006 CCKP06307 115 aa8.49□□□□□ -1.05
VPS39-201ENST00000318006 SMIM11BQ8TCY0 68 aa8.49□□□□□ -1.05
VPS39-201ENST00000318006 LINC00269Q8N2A0 174 aa8.49□□□□□ -1.05
VPS39-201ENST00000318006 ARHGAP32A7KAX9 2087 aa8.49□□□□□ -1.05
VPS39-201ENST00000318006 ANKRD11Q6UB99 2663 aaPredicted RBP8.49□□□□□ -1.05
VPS39-201ENST00000318006 REG3AQ06141 175 aa8.49□□□□□ -1.05
VPS39-201ENST00000318006 TRAV7A0A075B6U4 112 aa8.48□□□□□ -1.05
VPS39-201ENST00000318006 PRR9Q5T870 116 aa8.48□□□□□ -1.05
VPS39-201ENST00000318006 C10orf99Q6UWK7 81 aa8.48□□□□□ -1.05
VPS39-201ENST00000318006 POM121L12Q8N7R1 296 aa8.48□□□□□ -1.05
VPS39-201ENST00000318006 CHCHD10Q8WYQ3 142 aaPredicted RBP8.48□□□□□ -1.05
VPS39-201ENST00000318006 A0A096LNJ9 63 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 213.8 ms