RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 PLEKHB2Q96CS7 222 aa15.93■□□□□ 0.14
PDLIM2-202ENST00000308354 TRGV4A0A0C4DH28 118 aa15.92■□□□□ 0.14
PDLIM2-202ENST00000308354 H3BUT2 72 aa15.92■□□□□ 0.14
PDLIM2-202ENST00000308354 AMELXQ99217 191 aa15.92■□□□□ 0.14
PDLIM2-202ENST00000308354 RPL36AP83881 106 aaKnown RBP15.92■□□□□ 0.14
PDLIM2-202ENST00000308354 RPL36ALQ969Q0 106 aaKnown RBP15.92■□□□□ 0.14
PDLIM2-202ENST00000308354 NHP2Q9NX24 153 aaKnown RBP15.92■□□□□ 0.14
PDLIM2-202ENST00000308354 UBE2D4Q9Y2X8 147 aa15.92■□□□□ 0.14
PDLIM2-202ENST00000308354 SMIM13P0DJ93 91 aa15.91■□□□□ 0.14
PDLIM2-202ENST00000308354 SCGB1D4Q6XE38 83 aa15.91■□□□□ 0.14
PDLIM2-202ENST00000308354 ZNF22P17026 224 aaPredicted RBP15.91■□□□□ 0.14
PDLIM2-202ENST00000308354 TRBV10-1A0A0K0K1A3 114 aa15.9■□□□□ 0.14
PDLIM2-202ENST00000308354 FHL2Q14192 279 aa15.9■□□□□ 0.14
PDLIM2-202ENST00000308354 SPANXA1Q9NS26 97 aa15.9■□□□□ 0.14
PDLIM2-202ENST00000308354 TMEM223A0PJW6 202 aa15.89■□□□□ 0.13
PDLIM2-202ENST00000308354 SMIM9A6NGZ8 99 aa15.89■□□□□ 0.13
PDLIM2-202ENST00000308354 IGHV3-64A0A075B6Q5 118 aa15.87■□□□□ 0.13
PDLIM2-202ENST00000308354 J3QQQ9 107 aa15.87■□□□□ 0.13
PDLIM2-202ENST00000308354 UBE2D3P61077 147 aa15.87■□□□□ 0.13
PDLIM2-202ENST00000308354 UBE2D2P62837 147 aa15.87■□□□□ 0.13
PDLIM2-202ENST00000308354 FAM222AQ5U5X8 452 aa15.87■□□□□ 0.13
PDLIM2-202ENST00000308354 Q6ZUT4 128 aa15.87■□□□□ 0.13
PDLIM2-202ENST00000308354 CRYBA4P53673 196 aa15.87■□□□□ 0.13
PDLIM2-202ENST00000308354 IGHV4-28A0A0C4DH34 117 aa15.86■□□□□ 0.13
PDLIM2-202ENST00000308354 TRBV6-4A0A1B0GX49 114 aa15.86■□□□□ 0.13
PDLIM2-202ENST00000308354 NTM-AS1Q6ZSK4 140 aa15.86■□□□□ 0.13
PDLIM2-202ENST00000308354 MRPS36P82909 103 aaKnown RBP15.86■□□□□ 0.13
PDLIM2-202ENST00000308354 LINC00612Q8N6U2 182 aa15.85■□□□□ 0.13
PDLIM2-202ENST00000308354 LGALS3P17931 250 aaKnown RBP15.84■□□□□ 0.13
PDLIM2-202ENST00000308354 A0A0J9YY99 117 aa15.84■□□□□ 0.13
PDLIM2-202ENST00000308354 DAZ4Q86SG3 579 aaKnown RBP15.84■□□□□ 0.13
PDLIM2-202ENST00000308354 DAZ3Q9NR90 486 aaKnown RBP15.84■□□□□ 0.13
PDLIM2-202ENST00000308354 CMYA5Q8N3K9 4069 aa15.84■□□□□ 0.13
PDLIM2-202ENST00000308354 LEPROTO15243 131 aa15.83■□□□□ 0.13
PDLIM2-202ENST00000308354 A0A1W2PPM0 123 aa15.83■□□□□ 0.12
PDLIM2-202ENST00000308354 CIDEAO60543 219 aa15.83■□□□□ 0.12
PDLIM2-202ENST00000308354 LINC00694P0DN24 101 aa15.83■□□□□ 0.12
PDLIM2-202ENST00000308354 PCP4P48539 62 aa15.83■□□□□ 0.12
PDLIM2-202ENST00000308354 GAGE10A6NGK3 116 aa15.82■□□□□ 0.12
PDLIM2-202ENST00000308354 SRSF9Q13242 221 aaKnown RBP eCLIP15.82■□□□□ 0.12
PDLIM2-202ENST00000308354 C12orf74Q32Q52 190 aa15.82■□□□□ 0.12
PDLIM2-202ENST00000308354 G3V4G9 280 aa15.82■□□□□ 0.12
PDLIM2-202ENST00000308354 SAMD5Q5TGI4 173 aa15.81■□□□□ 0.12
PDLIM2-202ENST00000308354 RNF183Q96D59 192 aa15.81■□□□□ 0.12
PDLIM2-202ENST00000308354 EGFEM1PQ0D2K5 195 aa15.8■□□□□ 0.12
PDLIM2-202ENST00000308354 Q8NAQ8 132 aa15.8■□□□□ 0.12
PDLIM2-202ENST00000308354 CELA1Q9UNI1 258 aa15.8■□□□□ 0.12
PDLIM2-202ENST00000308354 DGAT2L7PQ6IED9 249 aa15.79■□□□□ 0.12
PDLIM2-202ENST00000308354 TINCRA0A1B0GVN0 87 aa15.79■□□□□ 0.12
PDLIM2-202ENST00000308354 LYRM9A8MSI8 78 aa15.79■□□□□ 0.12
PDLIM2-202ENST00000308354 K7EP34 96 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 ANK2Q01484 3957 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 OR5A1Q8NGJ0 315 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 TIMM21Q9BVV7 248 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 NOTCH1P46531 2555 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 TRAV8-3A0A0A6YYJ7 113 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 IGHV3-30-3P0DP02 117 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 FABP2P12104 132 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 GTF2H5Q6ZYL4 71 aa15.78■□□□□ 0.12
PDLIM2-202ENST00000308354 MIFP14174 115 aa15.77■□□□□ 0.12
PDLIM2-202ENST00000308354 A0A1B0GWB2 263 aa15.76■□□□□ 0.11
PDLIM2-202ENST00000308354 UBE2D1P51668 147 aa15.76■□□□□ 0.11
PDLIM2-202ENST00000308354 RETNQ9HD89 108 aa15.76■□□□□ 0.11
PDLIM2-202ENST00000308354 SPCS1Q9Y6A9 102 aa15.76■□□□□ 0.11
PDLIM2-202ENST00000308354 IGLL5B9A064 214 aa15.76■□□□□ 0.11
PDLIM2-202ENST00000308354 SPANXB1Q9NS25 103 aaPredicted RBP15.75■□□□□ 0.11
PDLIM2-202ENST00000308354 GYPEP15421 78 aa15.75■□□□□ 0.11
PDLIM2-202ENST00000308354 SBSPONQ8IVN8 264 aa15.75■□□□□ 0.11
PDLIM2-202ENST00000308354 DAD1P61803 113 aa15.74■□□□□ 0.11
PDLIM2-202ENST00000308354 GEMIN7Q9H840 131 aaKnown RBP15.74■□□□□ 0.11
PDLIM2-202ENST00000308354 SPINK8P0C7L1 97 aa15.74■□□□□ 0.11
PDLIM2-202ENST00000308354 C10orf126Q8N4M7 172 aa15.74■□□□□ 0.11
PDLIM2-202ENST00000308354 GTSF1LQ9H1H1 148 aa15.74■□□□□ 0.11
PDLIM2-202ENST00000308354 IGHV1-58A0A0C4DH39 117 aa15.73■□□□□ 0.11
PDLIM2-202ENST00000308354 TMEM238LA0A1B0GVL6 79 aa15.73■□□□□ 0.11
PDLIM2-202ENST00000308354 A6NJY4 79 aa15.73■□□□□ 0.11
PDLIM2-202ENST00000308354 IGHV3-30P01768 117 aa15.73■□□□□ 0.11
PDLIM2-202ENST00000308354 IGHV3-30-5P0DP03 117 aa15.73■□□□□ 0.11
PDLIM2-202ENST00000308354 A0A096LPF7 62 aa15.72■□□□□ 0.11
PDLIM2-202ENST00000308354 TMEM243Q9BU79 118 aa15.72■□□□□ 0.11
PDLIM2-202ENST00000308354 PRO0255Q9UI72 69 aa15.72■□□□□ 0.11
PDLIM2-202ENST00000308354 A8MZ25 164 aa15.71■□□□□ 0.11
PDLIM2-202ENST00000308354 VSIG2Q96IQ7 327 aa15.71■□□□□ 0.11
PDLIM2-202ENST00000308354 CDKN2A-AS1Q9UH64 79 aa15.71■□□□□ 0.11
PDLIM2-202ENST00000308354 UBE2L6O14933 153 aa15.71■□□□□ 0.1
PDLIM2-202ENST00000308354 C21orf62-AS1Q17RA5 79 aa15.71■□□□□ 0.1
PDLIM2-202ENST00000308354 CSDC2Q9Y534 153 aaKnown RBP15.71■□□□□ 0.1
PDLIM2-202ENST00000308354 RBX1P62877 108 aa15.7■□□□□ 0.1
PDLIM2-202ENST00000308354 PRB2P02812 416 aaPredicted RBP15.7■□□□□ 0.1
PDLIM2-202ENST00000308354 SPART-AS1P0CW21 52 aa15.7■□□□□ 0.1
PDLIM2-202ENST00000308354 COX6A2Q02221 97 aa15.7■□□□□ 0.1
PDLIM2-202ENST00000308354 TRBV6-8A0A0A6YYG3 113 aa15.69■□□□□ 0.1
PDLIM2-202ENST00000308354 PAX4O43316 350 aa15.69■□□□□ 0.1
PDLIM2-202ENST00000308354 HTN3P15516 51 aa15.69■□□□□ 0.1
PDLIM2-202ENST00000308354 GAGE6Q13070 117 aa15.69■□□□□ 0.1
PDLIM2-202ENST00000308354 A0A0J9YXY3 114 aa15.68■□□□□ 0.1
PDLIM2-202ENST00000308354 TIRAPP58753 221 aa15.68■□□□□ 0.1
PDLIM2-202ENST00000308354 IGLV5-45A0A087WSX0 123 aa15.68■□□□□ 0.1
PDLIM2-202ENST00000308354 LINC00242Q5T6M2 205 aa15.68■□□□□ 0.1
PDLIM2-202ENST00000308354 ATP6V0E2Q8NHE4 81 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms