RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PTPN13Q12923 2485 aa12.79□□□□□ -0.36
SHANK1-201ENST00000293441 SYCNQ0VAF6 134 aa12.79□□□□□ -0.36
SHANK1-201ENST00000293441 CLUHP3Q96NS8 147 aa12.79□□□□□ -0.36
SHANK1-201ENST00000293441 SLPIP03973 132 aa12.79□□□□□ -0.36
SHANK1-201ENST00000293441 OXLD1Q5BKU9 147 aa12.79□□□□□ -0.36
SHANK1-201ENST00000293441 Q8N6K4 173 aa12.79□□□□□ -0.36
SHANK1-201ENST00000293441 ZNF22P17026 224 aaPredicted RBP12.79□□□□□ -0.36
SHANK1-201ENST00000293441 BPY2O14599 106 aa12.78□□□□□ -0.36
SHANK1-201ENST00000293441 PDE6GP18545 87 aa12.78□□□□□ -0.36
SHANK1-201ENST00000293441 LINC00526Q96FQ7 95 aa12.78□□□□□ -0.36
SHANK1-201ENST00000293441 SS18L2Q9UHA2 77 aa12.78□□□□□ -0.36
SHANK1-201ENST00000293441 HCFC1P51610 2035 aa12.78□□□□□ -0.36
SHANK1-201ENST00000293441 CSPG4Q6UVK1 2322 aa12.77□□□□□ -0.36
SHANK1-201ENST00000293441 ANKHD1Q8IWZ3 2542 aaKnown RBP12.77□□□□□ -0.36
SHANK1-201ENST00000293441 A0A0J9YWU9 116 aa12.77□□□□□ -0.36
SHANK1-201ENST00000293441 NANOS2P60321 138 aaKnown RBP12.77□□□□□ -0.36
SHANK1-201ENST00000293441 SEC61GP60059 68 aa12.76□□□□□ -0.37
SHANK1-201ENST00000293441 RNF185Q96GF1 192 aa12.76□□□□□ -0.37
SHANK1-201ENST00000293441 IGKV2-28A0A075B6P5 120 aa12.76□□□□□ -0.37
SHANK1-201ENST00000293441 IGKV2D-28P01615 120 aa12.76□□□□□ -0.37
SHANK1-201ENST00000293441 IBA57-AS1B1ANH7 110 aa12.76□□□□□ -0.37
SHANK1-201ENST00000293441 ACACBO00763 2458 aa12.76□□□□□ -0.37
SHANK1-201ENST00000293441 KRTAP10-9P60411 292 aa12.76□□□□□ -0.37
SHANK1-201ENST00000293441 RBX1P62877 108 aa12.75□□□□□ -0.37
SHANK1-201ENST00000293441 IGLV1-40P01703 118 aa12.75□□□□□ -0.37
SHANK1-201ENST00000293441 UPK3BQ9BT76 320 aa12.75□□□□□ -0.37
SHANK1-201ENST00000293441 UBE2D1P51668 147 aa12.74□□□□□ -0.37
SHANK1-201ENST00000293441 AVPP01185 164 aa12.74□□□□□ -0.37
SHANK1-201ENST00000293441 PRR9Q5T870 116 aa12.74□□□□□ -0.37
SHANK1-201ENST00000293441 SPATA12Q7Z6I5 190 aa12.74□□□□□ -0.37
SHANK1-201ENST00000293441 SCXQ7RTU7 201 aa12.73□□□□□ -0.37
SHANK1-201ENST00000293441 LINC00308Q8TCZ7 52 aa12.73□□□□□ -0.37
SHANK1-201ENST00000293441 TRAV23DV6A0A075B6W5 121 aa12.73□□□□□ -0.37
SHANK1-201ENST00000293441 PPDPFQ9H3Y8 114 aa12.73□□□□□ -0.37
SHANK1-201ENST00000293441 SPANXB1Q9NS25 103 aaPredicted RBP12.73□□□□□ -0.37
SHANK1-201ENST00000293441 LRP4O75096 1905 aa12.73□□□□□ -0.37
SHANK1-201ENST00000293441 RNASE3P12724 160 aaKnown RBP12.73□□□□□ -0.37
SHANK1-201ENST00000293441 RAI1Q7Z5J4 1906 aaPredicted RBP12.72□□□□□ -0.37
SHANK1-201ENST00000293441 LELP1Q5T871 98 aa12.72□□□□□ -0.37
SHANK1-201ENST00000293441 A8MZ25 164 aa12.72□□□□□ -0.37
SHANK1-201ENST00000293441 IGHV4-30-4P0DP06 118 aa12.72□□□□□ -0.37
SHANK1-201ENST00000293441 CASC2Q6XLA1 102 aa12.72□□□□□ -0.37
SHANK1-201ENST00000293441 MBD6Q96DN6 1003 aa12.72□□□□□ -0.37
SHANK1-201ENST00000293441 NOTCH2Q04721 2471 aa12.72□□□□□ -0.37
SHANK1-201ENST00000293441 HRCT1Q6UXD1 115 aa12.72□□□□□ -0.37
SHANK1-201ENST00000293441 SMIM20Q8N5G0 67 aa12.71□□□□□ -0.37
SHANK1-201ENST00000293441 IGLV2-11P01706 119 aa12.71□□□□□ -0.37
SHANK1-201ENST00000293441 C9orf85Q96MD7 179 aa12.71□□□□□ -0.38
SHANK1-201ENST00000293441 TSHBP01222 138 aa12.7□□□□□ -0.38
SHANK1-201ENST00000293441 CD164L2Q6UWJ8 174 aa12.7□□□□□ -0.38
SHANK1-201ENST00000293441 ARHGAP32A7KAX9 2087 aa12.69□□□□□ -0.38
SHANK1-201ENST00000293441 EDN2P20800 178 aa12.69□□□□□ -0.38
SHANK1-201ENST00000293441 C6orf99Q4VX62 202 aa12.69□□□□□ -0.38
SHANK1-201ENST00000293441 U3KQK5 164 aa12.69□□□□□ -0.38
SHANK1-201ENST00000293441 SORL1Q92673 2214 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 MAPKAPK5-AS1Q8N8E1 139 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 PTPRSQ13332 1948 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 TRBV27A0A0K0K1C4 114 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 RPL37AP8A6NKH3 93 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 WFDC10BQ8IUB3 73 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 LINC00959A0A1B0GUT2 108 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 C1orf158Q8N1D5 194 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 PLXNB1O43157 2135 aa12.68□□□□□ -0.38
SHANK1-201ENST00000293441 IGLV4-69A0A075B6H9 119 aa12.67□□□□□ -0.38
SHANK1-201ENST00000293441 RETNQ9HD89 108 aa12.67□□□□□ -0.38
SHANK1-201ENST00000293441 SONP18583 2426 aaKnown RBP12.67□□□□□ -0.38
SHANK1-201ENST00000293441 SPINK6Q6UWN8 80 aa12.67□□□□□ -0.38
SHANK1-201ENST00000293441 C11orf21Q9P2W6 132 aa12.67□□□□□ -0.38
SHANK1-201ENST00000293441 TEX49A0A1B0GTD5 131 aa12.67□□□□□ -0.38
SHANK1-201ENST00000293441 KLLNB2CW77 178 aa12.67□□□□□ -0.38
SHANK1-201ENST00000293441 TP73-AS1Q9UF72 201 aa12.67□□□□□ -0.38
SHANK1-201ENST00000293441 NDUFA7O95182 113 aa12.66□□□□□ -0.38
SHANK1-201ENST00000293441 SDIM1Q6ZPB5 146 aa12.66□□□□□ -0.38
SHANK1-201ENST00000293441 UBE2D4Q9Y2X8 147 aa12.66□□□□□ -0.38
SHANK1-201ENST00000293441 TRBV6-5A0A0K0K1A5 114 aa12.65□□□□□ -0.38
SHANK1-201ENST00000293441 PRRC2AP48634 2157 aaKnown RBP12.65□□□□□ -0.38
SHANK1-201ENST00000293441 LINC00643Q86TS7 51 aa12.65□□□□□ -0.38
SHANK1-201ENST00000293441 ATG2AQ2TAZ0 1938 aa12.65□□□□□ -0.38
SHANK1-201ENST00000293441 LOC107984640A0A0U1RRK4 108 aa12.65□□□□□ -0.38
SHANK1-201ENST00000293441 NRACQ8N912 160 aa12.65□□□□□ -0.38
SHANK1-201ENST00000293441 PYGO1Q9Y3Y4 419 aa12.65□□□□□ -0.38
SHANK1-201ENST00000293441 C3orf84H3BNL1 204 aa12.64□□□□□ -0.39
SHANK1-201ENST00000293441 TRIAP1O43715 76 aa12.64□□□□□ -0.39
SHANK1-201ENST00000293441 G3V4G9 280 aa12.64□□□□□ -0.39
SHANK1-201ENST00000293441 HIVEP3Q5T1R4 2406 aa12.64□□□□□ -0.39
SHANK1-201ENST00000293441 RNASE8Q8TDE3 154 aaKnown RBP12.63□□□□□ -0.39
SHANK1-201ENST00000293441 USP17L23D6RBM5 183 aa12.63□□□□□ -0.39
SHANK1-201ENST00000293441 MRGPRG-AS1Q2M3A8 158 aa12.63□□□□□ -0.39
SHANK1-201ENST00000293441 M0R378 163 aa12.62□□□□□ -0.39
SHANK1-201ENST00000293441 IGLV9-49A0A0B4J1Y8 123 aa12.62□□□□□ -0.39
SHANK1-201ENST00000293441 CCKP06307 115 aa12.62□□□□□ -0.39
SHANK1-201ENST00000293441 ZNF706Q9Y5V0 76 aaPredicted RBP12.62□□□□□ -0.39
SHANK1-201ENST00000293441 ENHOQ6UWT2 76 aa12.62□□□□□ -0.39
SHANK1-201ENST00000293441 PLAC8L1A1L4L8 177 aa12.61□□□□□ -0.39
SHANK1-201ENST00000293441 UBE2D3P61077 147 aa12.6□□□□□ -0.39
SHANK1-201ENST00000293441 BRI3O95415 125 aa12.6□□□□□ -0.39
SHANK1-201ENST00000293441 DHRS4-AS1Q9P1J3 65 aa12.58□□□□□ -0.4
SHANK1-201ENST00000293441 GAS8-AS1O95177 125 aa12.58□□□□□ -0.4
SHANK1-201ENST00000293441 NUPR2A6NF83 97 aa12.57□□□□□ -0.4
SHANK1-201ENST00000293441 ODF3L2Q3SX64 289 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms