RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 Q6ZUT4 128 aa9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 TINCRA0A1B0GVN0 87 aa9.22□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE12JA6NER3 117 aa9.22□□□□□ -0.93
SPTLC1-201ENST00000262554 FABP2P12104 132 aa9.22□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE4Q13068 117 aa9.22□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE5Q13069 117 aa9.22□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE13Q4V321 117 aa9.22□□□□□ -0.93
SPTLC1-201ENST00000262554 IGHV3-64A0A075B6Q5 118 aa9.21□□□□□ -0.93
SPTLC1-201ENST00000262554 TRGV4A0A0C4DH28 118 aa9.21□□□□□ -0.93
SPTLC1-201ENST00000262554 TRBV6-4A0A1B0GX49 114 aa9.21□□□□□ -0.93
SPTLC1-201ENST00000262554 K7EP34 96 aa9.21□□□□□ -0.93
SPTLC1-201ENST00000262554 SPANXB1Q9NS25 103 aaPredicted RBP9.21□□□□□ -0.93
SPTLC1-201ENST00000262554 JMJD1CQ15652 2540 aa9.21□□□□□ -0.93
SPTLC1-201ENST00000262554 NIPBLQ6KC79 2804 aaeCLIP9.21□□□□□ -0.94
SPTLC1-201ENST00000262554 SMAGPQ0VAQ4 97 aa9.21□□□□□ -0.94
SPTLC1-201ENST00000262554 OR5A1Q8NGJ0 315 aa9.21□□□□□ -0.94
SPTLC1-201ENST00000262554 NOTCH2Q04721 2471 aa9.2□□□□□ -0.94
SPTLC1-201ENST00000262554 A0A1B0GWB2 263 aa9.2□□□□□ -0.94
SPTLC1-201ENST00000262554 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.2□□□□□ -0.94
SPTLC1-201ENST00000262554 CITED1Q99966 193 aa9.2□□□□□ -0.94
SPTLC1-201ENST00000262554 GEMIN7Q9H840 131 aaKnown RBP9.2□□□□□ -0.94
SPTLC1-201ENST00000262554 SPCS1Q9Y6A9 102 aa9.2□□□□□ -0.94
SPTLC1-201ENST00000262554 IGHV3-30-3P0DP02 117 aa9.19□□□□□ -0.94
SPTLC1-201ENST00000262554 UBE2D1P51668 147 aa9.19□□□□□ -0.94
SPTLC1-201ENST00000262554 GTSF1LQ9H1H1 148 aa9.19□□□□□ -0.94
SPTLC1-201ENST00000262554 CSDC2Q9Y534 153 aaKnown RBP9.19□□□□□ -0.94
SPTLC1-201ENST00000262554 NSD1Q96L73 2696 aaPredicted RBP9.19□□□□□ -0.94
SPTLC1-201ENST00000262554 IGLL5B9A064 214 aa9.19□□□□□ -0.94
SPTLC1-201ENST00000262554 NTM-AS1Q6ZSK4 140 aa9.19□□□□□ -0.94
SPTLC1-201ENST00000262554 C2CD3Q4AC94 2353 aa9.18□□□□□ -0.94
SPTLC1-201ENST00000262554 IGHV1-58A0A0C4DH39 117 aa9.18□□□□□ -0.94
SPTLC1-201ENST00000262554 SMIM9A6NGZ8 99 aa9.18□□□□□ -0.94
SPTLC1-201ENST00000262554 KIR2DL5BQ8NHK3 375 aa9.18□□□□□ -0.94
SPTLC1-201ENST00000262554 SPATA3Q8NHX4 192 aa9.18□□□□□ -0.94
SPTLC1-201ENST00000262554 FN1P02751 2386 aaKnown RBP9.18□□□□□ -0.94
SPTLC1-201ENST00000262554 NOTCH3Q9UM47 2321 aa9.18□□□□□ -0.94
SPTLC1-201ENST00000262554 UBE2L6O14933 153 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 LINC00694P0DN24 101 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 TIRAPP58753 221 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 FHL2Q14192 279 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 SBSPONQ8IVN8 264 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 TMEM243Q9BU79 118 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 TRAV8-3A0A0A6YYJ7 113 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 IGHV3-30P01768 117 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 IGHV3-30-5P0DP03 117 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 VSIG2Q96IQ7 327 aa9.17□□□□□ -0.94
SPTLC1-201ENST00000262554 LOC100131303A0A0U1RQF7 123 aa9.16□□□□□ -0.94
SPTLC1-201ENST00000262554 IGLV5-45A0A087WSX0 123 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 TMEM238C9JI98 176 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 SPINK8P0C7L1 97 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 DEFB130BP0DP73 79 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 DEFB130AP0DP74 79 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 LINC00612Q8N6U2 182 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 TMEM101Q96IK0 257 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 X6R8D5 127 aa9.15□□□□□ -0.94
SPTLC1-201ENST00000262554 H7C423 109 aa9.15□□□□□ -0.95
SPTLC1-201ENST00000262554 HERVK_113P63121 156 aa9.15□□□□□ -0.95
SPTLC1-201ENST00000262554 C10orf126Q8N4M7 172 aa9.15□□□□□ -0.95
SPTLC1-201ENST00000262554 A0A0J9YXY3 114 aa9.14□□□□□ -0.95
SPTLC1-201ENST00000262554 APOC4P55056 127 aa9.14□□□□□ -0.95
SPTLC1-201ENST00000262554 FAM19A3Q7Z5A8 133 aa9.14□□□□□ -0.95
SPTLC1-201ENST00000262554 CDKN2A-AS1Q9UH64 79 aa9.14□□□□□ -0.95
SPTLC1-201ENST00000262554 NDUFA12Q9UI09 145 aa9.14□□□□□ -0.95
SPTLC1-201ENST00000262554 HIVEP1P15822 2718 aa9.14□□□□□ -0.95
SPTLC1-201ENST00000262554 LINC00242Q5T6M2 205 aa9.13□□□□□ -0.95
SPTLC1-201ENST00000262554 CDC42SE2Q9NRR3 84 aa9.13□□□□□ -0.95
SPTLC1-201ENST00000262554 APOMO95445 188 aa9.13□□□□□ -0.95
SPTLC1-201ENST00000262554 TRAV13-1A0A0B4J241 112 aa9.12□□□□□ -0.95
SPTLC1-201ENST00000262554 RPL24P83731 157 aaKnown RBP9.12□□□□□ -0.95
SPTLC1-201ENST00000262554 COX6A2Q02221 97 aa9.12□□□□□ -0.95
SPTLC1-201ENST00000262554 ZFAND6Q6FIF0 208 aa9.12□□□□□ -0.95
SPTLC1-201ENST00000262554 WFDC9Q8NEX5 89 aa9.11□□□□□ -0.95
SPTLC1-201ENST00000262554 TRBV6-8A0A0A6YYG3 113 aa9.11□□□□□ -0.95
SPTLC1-201ENST00000262554 LYRM9A8MSI8 78 aa9.11□□□□□ -0.95
SPTLC1-201ENST00000262554 CFC1BP0CG36 223 aa9.11□□□□□ -0.95
SPTLC1-201ENST00000262554 CFC1P0CG37 223 aa9.11□□□□□ -0.95
SPTLC1-201ENST00000262554 DEFB135Q30KP9 77 aa9.11□□□□□ -0.95
SPTLC1-201ENST00000262554 A8MZ25 164 aa9.1□□□□□ -0.95
SPTLC1-201ENST00000262554 LCE2AQ5TA79 106 aaPredicted RBP9.1□□□□□ -0.95
SPTLC1-201ENST00000262554 MUSTN1Q8IVN3 82 aa9.1□□□□□ -0.95
SPTLC1-201ENST00000262554 A4D1N5 150 aa9.09□□□□□ -0.95
SPTLC1-201ENST00000262554 WIPF1O43516 503 aa9.09□□□□□ -0.95
SPTLC1-201ENST00000262554 TSPAN13O95857 204 aa9.09□□□□□ -0.95
SPTLC1-201ENST00000262554 GYPEP15421 78 aa9.09□□□□□ -0.95
SPTLC1-201ENST00000262554 GAGE6Q13070 117 aa9.09□□□□□ -0.95
SPTLC1-201ENST00000262554 FAM222AQ5U5X8 452 aa9.09□□□□□ -0.95
SPTLC1-201ENST00000262554 NDUFA1O15239 70 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 EIF4EBP3O60516 100 aaPredicted RBP9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 LITAFQ99732 161 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 CHCHD5Q9BSY4 110 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 SPANXDQ9BXN6 97 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 SPANXCQ9NY87 97 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 PRO1854Q9UHT4 67 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 PRO0255Q9UI72 69 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 IGLV5-39A0A0G2JS06 123 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 OCIAD2Q56VL3 154 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 LYRM7Q5U5X0 104 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 ATP6V0E2Q8NHE4 81 aa9.08□□□□□ -0.96
SPTLC1-201ENST00000262554 TIMM17BO60830 172 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms