RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 TRAV8-3A0A0A6YYJ7 113 aa13.38□□□□□ -0.27
PDLIM4-201ENST00000253754 CITED1Q99966 193 aa13.38□□□□□ -0.27
PDLIM4-201ENST00000253754 PGPEP1Q9NXJ5 209 aa13.38□□□□□ -0.27
PDLIM4-201ENST00000253754 IGHV3-30P01768 117 aa13.38□□□□□ -0.27
PDLIM4-201ENST00000253754 IGHV3-30-5P0DP03 117 aa13.38□□□□□ -0.27
PDLIM4-201ENST00000253754 APOMO95445 188 aa13.37□□□□□ -0.27
PDLIM4-201ENST00000253754 UBE2D1P51668 147 aa13.37□□□□□ -0.27
PDLIM4-201ENST00000253754 SPANXA1Q9NS26 97 aa13.37□□□□□ -0.27
PDLIM4-201ENST00000253754 PLAC8L1A1L4L8 177 aa13.37□□□□□ -0.27
PDLIM4-201ENST00000253754 A6NJY4 79 aa13.36□□□□□ -0.27
PDLIM4-201ENST00000253754 SFTA2Q6UW10 78 aa13.36□□□□□ -0.27
PDLIM4-201ENST00000253754 C10orf126Q8N4M7 172 aa13.36□□□□□ -0.27
PDLIM4-201ENST00000253754 SPANXB1Q9NS25 103 aaPredicted RBP13.36□□□□□ -0.27
PDLIM4-201ENST00000253754 H3BMG7 143 aa13.36□□□□□ -0.27
PDLIM4-201ENST00000253754 IGHV3-30-3P0DP02 117 aa13.36□□□□□ -0.27
PDLIM4-201ENST00000253754 KRTAP24-1Q3LI83 254 aa13.36□□□□□ -0.27
PDLIM4-201ENST00000253754 A8MZ25 164 aa13.35□□□□□ -0.27
PDLIM4-201ENST00000253754 K7EQD1 137 aa13.35□□□□□ -0.27
PDLIM4-201ENST00000253754 SPATA3Q8NHX4 192 aa13.35□□□□□ -0.27
PDLIM4-201ENST00000253754 TIMM21Q9BVV7 248 aa13.35□□□□□ -0.27
PDLIM4-201ENST00000253754 PKD1L1Q8TDX9 2849 aa13.35□□□□□ -0.27
PDLIM4-201ENST00000253754 LINC00694P0DN24 101 aa13.34□□□□□ -0.27
PDLIM4-201ENST00000253754 CRYBA4P53673 196 aa13.34□□□□□ -0.27
PDLIM4-201ENST00000253754 TRAV4A0A0B4J268 109 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE12JA6NER3 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE7O76087 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 SPINK8P0C7L1 97 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE12FP0CL80 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE12GP0CL81 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE12IP0CL82 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 CMC4P56277 68 aaPredicted RBP13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE4Q13068 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE5Q13069 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 GAGE13Q4V321 117 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 MTURNQ8N3F0 131 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 CSNK1G2-AS1Q8NCQ2 148 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 TSPAN13O95857 204 aa13.33□□□□□ -0.28
PDLIM4-201ENST00000253754 TINCRA0A1B0GVN0 87 aa13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 NTM-AS1Q6ZSK4 140 aa13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 CFC1BP0CG36 223 aa13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 CFC1P0CG37 223 aa13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 RPL36AP83881 106 aaKnown RBP13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 DAZ2Q13117 558 aaKnown RBP13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 RPL36ALQ969Q0 106 aaKnown RBP13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 FAM110AQ9BQ89 295 aa13.32□□□□□ -0.28
PDLIM4-201ENST00000253754 A0A1B0GV72 72 aa13.31□□□□□ -0.28
PDLIM4-201ENST00000253754 C16orf74Q96GX8 76 aa13.31□□□□□ -0.28
PDLIM4-201ENST00000253754 TRGV2A0A075B6R0 118 aa13.3□□□□□ -0.28
PDLIM4-201ENST00000253754 A0A0J9YXY3 114 aa13.3□□□□□ -0.28
PDLIM4-201ENST00000253754 IGHV1-58A0A0C4DH39 117 aa13.3□□□□□ -0.28
PDLIM4-201ENST00000253754 LOC100131303A0A0U1RQF7 123 aa13.3□□□□□ -0.28
PDLIM4-201ENST00000253754 DGAT2L7PQ6IED9 249 aa13.3□□□□□ -0.28
PDLIM4-201ENST00000253754 WFDC2Q14508 124 aa13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 TRBV10-1A0A0K0K1A3 114 aa13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 EIF4EBP3O60516 100 aaPredicted RBP13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 UBE2D3P61077 147 aa13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 UBE2D2P62837 147 aa13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 VSIG2Q96IQ7 327 aa13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 GEMIN7Q9H840 131 aaKnown RBP13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 CDKN2A-AS1Q9UH64 79 aa13.29□□□□□ -0.28
PDLIM4-201ENST00000253754 A4D1N5 150 aa13.28□□□□□ -0.28
PDLIM4-201ENST00000253754 MUSTN1Q8IVN3 82 aa13.28□□□□□ -0.28
PDLIM4-201ENST00000253754 COX6A2Q02221 97 aa13.28□□□□□ -0.28
PDLIM4-201ENST00000253754 LOC107984156A0A0G2JMH3 177 aa13.27□□□□□ -0.28
PDLIM4-201ENST00000253754 ARL17AQ8IVW1 177 aa13.27□□□□□ -0.28
PDLIM4-201ENST00000253754 C1QTNF4Q9BXJ3 329 aa13.27□□□□□ -0.28
PDLIM4-201ENST00000253754 RPL24P83731 157 aaKnown RBP13.27□□□□□ -0.29
PDLIM4-201ENST00000253754 LITAFQ99732 161 aa13.27□□□□□ -0.29
PDLIM4-201ENST00000253754 NDUFA12Q9UI09 145 aa13.27□□□□□ -0.29
PDLIM4-201ENST00000253754 C9orf66Q5T8R8 295 aa13.26□□□□□ -0.29
PDLIM4-201ENST00000253754 DAZ4Q86SG3 579 aaKnown RBP13.26□□□□□ -0.29
PDLIM4-201ENST00000253754 DAZ3Q9NR90 486 aaKnown RBP13.26□□□□□ -0.29
PDLIM4-201ENST00000253754 INSL3P51460 131 aa13.25□□□□□ -0.29
PDLIM4-201ENST00000253754 TEX48A0A1B0GUV7 120 aa13.25□□□□□ -0.29
PDLIM4-201ENST00000253754 ADAMTSL4-AS1Q5T5F5 129 aa13.25□□□□□ -0.29
PDLIM4-201ENST00000253754 SBSPONQ8IVN8 264 aa13.24□□□□□ -0.29
PDLIM4-201ENST00000253754 SIGMAR1Q99720 223 aa13.24□□□□□ -0.29
PDLIM4-201ENST00000253754 OVOL2Q9BRP0 275 aa13.24□□□□□ -0.29
PDLIM4-201ENST00000253754 PRO0461Q9UI25 63 aa13.24□□□□□ -0.29
PDLIM4-201ENST00000253754 LINC00242Q5T6M2 205 aa13.24□□□□□ -0.29
PDLIM4-201ENST00000253754 TRAV13-1A0A0B4J241 112 aa13.23□□□□□ -0.29
PDLIM4-201ENST00000253754 F8W1H4 67 aa13.23□□□□□ -0.29
PDLIM4-201ENST00000253754 TRGV4A0A0C4DH28 118 aa13.23□□□□□ -0.29
PDLIM4-201ENST00000253754 PSMB2P49721 201 aa13.23□□□□□ -0.29
PDLIM4-201ENST00000253754 SH2D6Q7Z4S9 175 aa13.23□□□□□ -0.29
PDLIM4-201ENST00000253754 PRO1854Q9UHT4 67 aa13.23□□□□□ -0.29
PDLIM4-201ENST00000253754 IGLV5-45A0A087WSX0 123 aa13.22□□□□□ -0.29
PDLIM4-201ENST00000253754 NPC2P61916 151 aa13.22□□□□□ -0.29
PDLIM4-201ENST00000253754 TMEM101Q96IK0 257 aa13.22□□□□□ -0.29
PDLIM4-201ENST00000253754 TIRAPP58753 221 aa13.22□□□□□ -0.29
PDLIM4-201ENST00000253754 C3orf56Q8N813 242 aa13.22□□□□□ -0.29
PDLIM4-201ENST00000253754 NBEAL2Q6ZNJ1 2754 aa13.21□□□□□ -0.29
PDLIM4-201ENST00000253754 H7C2G1 150 aa13.21□□□□□ -0.29
PDLIM4-201ENST00000253754 PRSS2P07478 247 aa13.21□□□□□ -0.29
PDLIM4-201ENST00000253754 ETDBQ3ZM63 59 aa13.2□□□□□ -0.3
PDLIM4-201ENST00000253754 ZFAND6Q6FIF0 208 aa13.2□□□□□ -0.3
PDLIM4-201ENST00000253754 TRBV6-4A0A1B0GX49 114 aa13.2□□□□□ -0.3
PDLIM4-201ENST00000253754 DEFB130BP0DP73 79 aa13.2□□□□□ -0.3
PDLIM4-201ENST00000253754 DEFB130AP0DP74 79 aa13.2□□□□□ -0.3
PDLIM4-201ENST00000253754 FHL2Q14192 279 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms